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vendor update for CSI 0.3.0

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This commit is contained in:
gman
2018-07-18 16:47:22 +02:00
parent 6f484f92fc
commit 8ea659f0d5
6810 changed files with 438061 additions and 193861 deletions
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1090
vendor/google.golang.org/genproto/googleapis/genomics/v1/annotations.pb.go generated vendored
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File diff suppressed because it is too large Load Diff

54
vendor/google.golang.org/genproto/googleapis/genomics/v1/cigar.pb.go generated vendored
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@ -1,7 +1,7 @@
// Code generated by protoc-gen-go. DO NOT EDIT.
// source: google/genomics/v1/cigar.proto
package genomics
package genomics // import "google.golang.org/genproto/googleapis/genomics/v1"
import proto "github.com/golang/protobuf/proto"
import fmt "fmt"
@ -13,6 +13,12 @@ var _ = proto.Marshal
var _ = fmt.Errorf
var _ = math.Inf
// This is a compile-time assertion to ensure that this generated file
// is compatible with the proto package it is being compiled against.
// A compilation error at this line likely means your copy of the
// proto package needs to be updated.
const _ = proto.ProtoPackageIsVersion2 // please upgrade the proto package
// Describes the different types of CIGAR alignment operations that exist.
// Used wherever CIGAR alignments are used.
type CigarUnit_Operation int32
@ -93,24 +99,48 @@ var CigarUnit_Operation_value = map[string]int32{
func (x CigarUnit_Operation) String() string {
return proto.EnumName(CigarUnit_Operation_name, int32(x))
}
func (CigarUnit_Operation) EnumDescriptor() ([]byte, []int) { return fileDescriptor1, []int{0, 0} }
func (CigarUnit_Operation) EnumDescriptor() ([]byte, []int) {
return fileDescriptor_cigar_ce8c8036b76f9461, []int{0, 0}
}
// A single CIGAR operation.
type CigarUnit struct {
Operation CigarUnit_Operation `protobuf:"varint,1,opt,name=operation,enum=google.genomics.v1.CigarUnit_Operation" json:"operation,omitempty"`
Operation CigarUnit_Operation `protobuf:"varint,1,opt,name=operation,proto3,enum=google.genomics.v1.CigarUnit_Operation" json:"operation,omitempty"`
// The number of genomic bases that the operation runs for. Required.
OperationLength int64 `protobuf:"varint,2,opt,name=operation_length,json=operationLength" json:"operation_length,omitempty"`
OperationLength int64 `protobuf:"varint,2,opt,name=operation_length,json=operationLength,proto3" json:"operation_length,omitempty"`
// `referenceSequence` is only used at mismatches
// (`SEQUENCE_MISMATCH`) and deletions (`DELETE`).
// Filling this field replaces SAM's MD tag. If the relevant information is
// not available, this field is unset.
ReferenceSequence string `protobuf:"bytes,3,opt,name=reference_sequence,json=referenceSequence" json:"reference_sequence,omitempty"`
ReferenceSequence string `protobuf:"bytes,3,opt,name=reference_sequence,json=referenceSequence,proto3" json:"reference_sequence,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *CigarUnit) Reset() { *m = CigarUnit{} }
func (m *CigarUnit) String() string { return proto.CompactTextString(m) }
func (*CigarUnit) ProtoMessage() {}
func (*CigarUnit) Descriptor() ([]byte, []int) { return fileDescriptor1, []int{0} }
func (m *CigarUnit) Reset() { *m = CigarUnit{} }
func (m *CigarUnit) String() string { return proto.CompactTextString(m) }
func (*CigarUnit) ProtoMessage() {}
func (*CigarUnit) Descriptor() ([]byte, []int) {
return fileDescriptor_cigar_ce8c8036b76f9461, []int{0}
}
func (m *CigarUnit) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_CigarUnit.Unmarshal(m, b)
}
func (m *CigarUnit) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_CigarUnit.Marshal(b, m, deterministic)
}
func (dst *CigarUnit) XXX_Merge(src proto.Message) {
xxx_messageInfo_CigarUnit.Merge(dst, src)
}
func (m *CigarUnit) XXX_Size() int {
return xxx_messageInfo_CigarUnit.Size(m)
}
func (m *CigarUnit) XXX_DiscardUnknown() {
xxx_messageInfo_CigarUnit.DiscardUnknown(m)
}
var xxx_messageInfo_CigarUnit proto.InternalMessageInfo
func (m *CigarUnit) GetOperation() CigarUnit_Operation {
if m != nil {
@ -138,9 +168,11 @@ func init() {
proto.RegisterEnum("google.genomics.v1.CigarUnit_Operation", CigarUnit_Operation_name, CigarUnit_Operation_value)
}
func init() { proto.RegisterFile("google/genomics/v1/cigar.proto", fileDescriptor1) }
func init() {
proto.RegisterFile("google/genomics/v1/cigar.proto", fileDescriptor_cigar_ce8c8036b76f9461)
}
var fileDescriptor1 = []byte{
var fileDescriptor_cigar_ce8c8036b76f9461 = []byte{
// 367 bytes of a gzipped FileDescriptorProto
0x1f, 0x8b, 0x08, 0x00, 0x00, 0x00, 0x00, 0x00, 0x02, 0xff, 0x6c, 0x51, 0xcf, 0x0e, 0x93, 0x30,
0x1c, 0xb6, 0x63, 0x6e, 0xe3, 0x97, 0xb8, 0x75, 0x35, 0x33, 0xd3, 0x18, 0xb3, 0xec, 0xe2, 0x3c,

369
vendor/google.golang.org/genproto/googleapis/genomics/v1/datasets.pb.go generated vendored
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@ -1,17 +1,16 @@
// Code generated by protoc-gen-go. DO NOT EDIT.
// source: google/genomics/v1/datasets.proto
package genomics
package genomics // import "google.golang.org/genproto/googleapis/genomics/v1"
import proto "github.com/golang/protobuf/proto"
import fmt "fmt"
import math "math"
import empty "github.com/golang/protobuf/ptypes/empty"
import timestamp "github.com/golang/protobuf/ptypes/timestamp"
import _ "google.golang.org/genproto/googleapis/api/annotations"
import google_iam_v11 "google.golang.org/genproto/googleapis/iam/v1"
import google_iam_v1 "google.golang.org/genproto/googleapis/iam/v1"
import google_protobuf1 "github.com/golang/protobuf/ptypes/empty"
import google_protobuf2 "google.golang.org/genproto/protobuf/field_mask"
import google_protobuf6 "github.com/golang/protobuf/ptypes/timestamp"
import v1 "google.golang.org/genproto/googleapis/iam/v1"
import field_mask "google.golang.org/genproto/protobuf/field_mask"
import (
context "golang.org/x/net/context"
@ -23,25 +22,53 @@ var _ = proto.Marshal
var _ = fmt.Errorf
var _ = math.Inf
// This is a compile-time assertion to ensure that this generated file
// is compatible with the proto package it is being compiled against.
// A compilation error at this line likely means your copy of the
// proto package needs to be updated.
const _ = proto.ProtoPackageIsVersion2 // please upgrade the proto package
// A Dataset is a collection of genomic data.
//
// For more genomics resource definitions, see [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
type Dataset struct {
// The server-generated dataset ID, unique across all datasets.
Id string `protobuf:"bytes,1,opt,name=id" json:"id,omitempty"`
Id string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
// The Google Cloud project ID that this dataset belongs to.
ProjectId string `protobuf:"bytes,2,opt,name=project_id,json=projectId" json:"project_id,omitempty"`
ProjectId string `protobuf:"bytes,2,opt,name=project_id,json=projectId,proto3" json:"project_id,omitempty"`
// The dataset name.
Name string `protobuf:"bytes,3,opt,name=name" json:"name,omitempty"`
Name string `protobuf:"bytes,3,opt,name=name,proto3" json:"name,omitempty"`
// The time this dataset was created, in seconds from the epoch.
CreateTime *google_protobuf6.Timestamp `protobuf:"bytes,4,opt,name=create_time,json=createTime" json:"create_time,omitempty"`
CreateTime *timestamp.Timestamp `protobuf:"bytes,4,opt,name=create_time,json=createTime,proto3" json:"create_time,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *Dataset) Reset() { *m = Dataset{} }
func (m *Dataset) String() string { return proto.CompactTextString(m) }
func (*Dataset) ProtoMessage() {}
func (*Dataset) Descriptor() ([]byte, []int) { return fileDescriptor2, []int{0} }
func (m *Dataset) Reset() { *m = Dataset{} }
func (m *Dataset) String() string { return proto.CompactTextString(m) }
func (*Dataset) ProtoMessage() {}
func (*Dataset) Descriptor() ([]byte, []int) {
return fileDescriptor_datasets_6135563a56d7e4f8, []int{0}
}
func (m *Dataset) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_Dataset.Unmarshal(m, b)
}
func (m *Dataset) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_Dataset.Marshal(b, m, deterministic)
}
func (dst *Dataset) XXX_Merge(src proto.Message) {
xxx_messageInfo_Dataset.Merge(dst, src)
}
func (m *Dataset) XXX_Size() int {
return xxx_messageInfo_Dataset.Size(m)
}
func (m *Dataset) XXX_DiscardUnknown() {
xxx_messageInfo_Dataset.DiscardUnknown(m)
}
var xxx_messageInfo_Dataset proto.InternalMessageInfo
func (m *Dataset) GetId() string {
if m != nil {
@ -64,7 +91,7 @@ func (m *Dataset) GetName() string {
return ""
}
func (m *Dataset) GetCreateTime() *google_protobuf6.Timestamp {
func (m *Dataset) GetCreateTime() *timestamp.Timestamp {
if m != nil {
return m.CreateTime
}
@ -74,20 +101,42 @@ func (m *Dataset) GetCreateTime() *google_protobuf6.Timestamp {
// The dataset list request.
type ListDatasetsRequest struct {
// Required. The Google Cloud project ID to list datasets for.
ProjectId string `protobuf:"bytes,1,opt,name=project_id,json=projectId" json:"project_id,omitempty"`
ProjectId string `protobuf:"bytes,1,opt,name=project_id,json=projectId,proto3" json:"project_id,omitempty"`
// The maximum number of results to return in a single page. If unspecified,
// defaults to 50. The maximum value is 1024.
PageSize int32 `protobuf:"varint,2,opt,name=page_size,json=pageSize" json:"page_size,omitempty"`
PageSize int32 `protobuf:"varint,2,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
// The continuation token, which is used to page through large result sets.
// To get the next page of results, set this parameter to the value of
// `nextPageToken` from the previous response.
PageToken string `protobuf:"bytes,3,opt,name=page_token,json=pageToken" json:"page_token,omitempty"`
PageToken string `protobuf:"bytes,3,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *ListDatasetsRequest) Reset() { *m = ListDatasetsRequest{} }
func (m *ListDatasetsRequest) String() string { return proto.CompactTextString(m) }
func (*ListDatasetsRequest) ProtoMessage() {}
func (*ListDatasetsRequest) Descriptor() ([]byte, []int) { return fileDescriptor2, []int{1} }
func (m *ListDatasetsRequest) Reset() { *m = ListDatasetsRequest{} }
func (m *ListDatasetsRequest) String() string { return proto.CompactTextString(m) }
func (*ListDatasetsRequest) ProtoMessage() {}
func (*ListDatasetsRequest) Descriptor() ([]byte, []int) {
return fileDescriptor_datasets_6135563a56d7e4f8, []int{1}
}
func (m *ListDatasetsRequest) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_ListDatasetsRequest.Unmarshal(m, b)
}
func (m *ListDatasetsRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_ListDatasetsRequest.Marshal(b, m, deterministic)
}
func (dst *ListDatasetsRequest) XXX_Merge(src proto.Message) {
xxx_messageInfo_ListDatasetsRequest.Merge(dst, src)
}
func (m *ListDatasetsRequest) XXX_Size() int {
return xxx_messageInfo_ListDatasetsRequest.Size(m)
}
func (m *ListDatasetsRequest) XXX_DiscardUnknown() {
xxx_messageInfo_ListDatasetsRequest.DiscardUnknown(m)
}
var xxx_messageInfo_ListDatasetsRequest proto.InternalMessageInfo
func (m *ListDatasetsRequest) GetProjectId() string {
if m != nil {
@ -113,17 +162,39 @@ func (m *ListDatasetsRequest) GetPageToken() string {
// The dataset list response.
type ListDatasetsResponse struct {
// The list of matching Datasets.
Datasets []*Dataset `protobuf:"bytes,1,rep,name=datasets" json:"datasets,omitempty"`
Datasets []*Dataset `protobuf:"bytes,1,rep,name=datasets,proto3" json:"datasets,omitempty"`
// The continuation token, which is used to page through large result sets.
// Provide this value in a subsequent request to return the next page of
// results. This field will be empty if there aren't any additional results.
NextPageToken string `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken" json:"next_page_token,omitempty"`
NextPageToken string `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *ListDatasetsResponse) Reset() { *m = ListDatasetsResponse{} }
func (m *ListDatasetsResponse) String() string { return proto.CompactTextString(m) }
func (*ListDatasetsResponse) ProtoMessage() {}
func (*ListDatasetsResponse) Descriptor() ([]byte, []int) { return fileDescriptor2, []int{2} }
func (m *ListDatasetsResponse) Reset() { *m = ListDatasetsResponse{} }
func (m *ListDatasetsResponse) String() string { return proto.CompactTextString(m) }
func (*ListDatasetsResponse) ProtoMessage() {}
func (*ListDatasetsResponse) Descriptor() ([]byte, []int) {
return fileDescriptor_datasets_6135563a56d7e4f8, []int{2}
}
func (m *ListDatasetsResponse) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_ListDatasetsResponse.Unmarshal(m, b)
}
func (m *ListDatasetsResponse) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_ListDatasetsResponse.Marshal(b, m, deterministic)
}
func (dst *ListDatasetsResponse) XXX_Merge(src proto.Message) {
xxx_messageInfo_ListDatasetsResponse.Merge(dst, src)
}
func (m *ListDatasetsResponse) XXX_Size() int {
return xxx_messageInfo_ListDatasetsResponse.Size(m)
}
func (m *ListDatasetsResponse) XXX_DiscardUnknown() {
xxx_messageInfo_ListDatasetsResponse.DiscardUnknown(m)
}
var xxx_messageInfo_ListDatasetsResponse proto.InternalMessageInfo
func (m *ListDatasetsResponse) GetDatasets() []*Dataset {
if m != nil {
@ -141,13 +212,35 @@ func (m *ListDatasetsResponse) GetNextPageToken() string {
type CreateDatasetRequest struct {
// The dataset to be created. Must contain projectId and name.
Dataset *Dataset `protobuf:"bytes,1,opt,name=dataset" json:"dataset,omitempty"`
Dataset *Dataset `protobuf:"bytes,1,opt,name=dataset,proto3" json:"dataset,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *CreateDatasetRequest) Reset() { *m = CreateDatasetRequest{} }
func (m *CreateDatasetRequest) String() string { return proto.CompactTextString(m) }
func (*CreateDatasetRequest) ProtoMessage() {}
func (*CreateDatasetRequest) Descriptor() ([]byte, []int) { return fileDescriptor2, []int{3} }
func (m *CreateDatasetRequest) Reset() { *m = CreateDatasetRequest{} }
func (m *CreateDatasetRequest) String() string { return proto.CompactTextString(m) }
func (*CreateDatasetRequest) ProtoMessage() {}
func (*CreateDatasetRequest) Descriptor() ([]byte, []int) {
return fileDescriptor_datasets_6135563a56d7e4f8, []int{3}
}
func (m *CreateDatasetRequest) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_CreateDatasetRequest.Unmarshal(m, b)
}
func (m *CreateDatasetRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_CreateDatasetRequest.Marshal(b, m, deterministic)
}
func (dst *CreateDatasetRequest) XXX_Merge(src proto.Message) {
xxx_messageInfo_CreateDatasetRequest.Merge(dst, src)
}
func (m *CreateDatasetRequest) XXX_Size() int {
return xxx_messageInfo_CreateDatasetRequest.Size(m)
}
func (m *CreateDatasetRequest) XXX_DiscardUnknown() {
xxx_messageInfo_CreateDatasetRequest.DiscardUnknown(m)
}
var xxx_messageInfo_CreateDatasetRequest proto.InternalMessageInfo
func (m *CreateDatasetRequest) GetDataset() *Dataset {
if m != nil {
@ -158,20 +251,42 @@ func (m *CreateDatasetRequest) GetDataset() *Dataset {
type UpdateDatasetRequest struct {
// The ID of the dataset to be updated.
DatasetId string `protobuf:"bytes,1,opt,name=dataset_id,json=datasetId" json:"dataset_id,omitempty"`
DatasetId string `protobuf:"bytes,1,opt,name=dataset_id,json=datasetId,proto3" json:"dataset_id,omitempty"`
// The new dataset data.
Dataset *Dataset `protobuf:"bytes,2,opt,name=dataset" json:"dataset,omitempty"`
Dataset *Dataset `protobuf:"bytes,2,opt,name=dataset,proto3" json:"dataset,omitempty"`
// An optional mask specifying which fields to update. At this time, the only
// mutable field is [name][google.genomics.v1.Dataset.name]. The only
// acceptable value is "name". If unspecified, all mutable fields will be
// updated.
UpdateMask *google_protobuf2.FieldMask `protobuf:"bytes,3,opt,name=update_mask,json=updateMask" json:"update_mask,omitempty"`
UpdateMask *field_mask.FieldMask `protobuf:"bytes,3,opt,name=update_mask,json=updateMask,proto3" json:"update_mask,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *UpdateDatasetRequest) Reset() { *m = UpdateDatasetRequest{} }
func (m *UpdateDatasetRequest) String() string { return proto.CompactTextString(m) }
func (*UpdateDatasetRequest) ProtoMessage() {}
func (*UpdateDatasetRequest) Descriptor() ([]byte, []int) { return fileDescriptor2, []int{4} }
func (m *UpdateDatasetRequest) Reset() { *m = UpdateDatasetRequest{} }
func (m *UpdateDatasetRequest) String() string { return proto.CompactTextString(m) }
func (*UpdateDatasetRequest) ProtoMessage() {}
func (*UpdateDatasetRequest) Descriptor() ([]byte, []int) {
return fileDescriptor_datasets_6135563a56d7e4f8, []int{4}
}
func (m *UpdateDatasetRequest) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_UpdateDatasetRequest.Unmarshal(m, b)
}
func (m *UpdateDatasetRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_UpdateDatasetRequest.Marshal(b, m, deterministic)
}
func (dst *UpdateDatasetRequest) XXX_Merge(src proto.Message) {
xxx_messageInfo_UpdateDatasetRequest.Merge(dst, src)
}
func (m *UpdateDatasetRequest) XXX_Size() int {
return xxx_messageInfo_UpdateDatasetRequest.Size(m)
}
func (m *UpdateDatasetRequest) XXX_DiscardUnknown() {
xxx_messageInfo_UpdateDatasetRequest.DiscardUnknown(m)
}
var xxx_messageInfo_UpdateDatasetRequest proto.InternalMessageInfo
func (m *UpdateDatasetRequest) GetDatasetId() string {
if m != nil {
@ -187,7 +302,7 @@ func (m *UpdateDatasetRequest) GetDataset() *Dataset {
return nil
}
func (m *UpdateDatasetRequest) GetUpdateMask() *google_protobuf2.FieldMask {
func (m *UpdateDatasetRequest) GetUpdateMask() *field_mask.FieldMask {
if m != nil {
return m.UpdateMask
}
@ -196,13 +311,35 @@ func (m *UpdateDatasetRequest) GetUpdateMask() *google_protobuf2.FieldMask {
type DeleteDatasetRequest struct {
// The ID of the dataset to be deleted.
DatasetId string `protobuf:"bytes,1,opt,name=dataset_id,json=datasetId" json:"dataset_id,omitempty"`
DatasetId string `protobuf:"bytes,1,opt,name=dataset_id,json=datasetId,proto3" json:"dataset_id,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *DeleteDatasetRequest) Reset() { *m = DeleteDatasetRequest{} }
func (m *DeleteDatasetRequest) String() string { return proto.CompactTextString(m) }
func (*DeleteDatasetRequest) ProtoMessage() {}
func (*DeleteDatasetRequest) Descriptor() ([]byte, []int) { return fileDescriptor2, []int{5} }
func (m *DeleteDatasetRequest) Reset() { *m = DeleteDatasetRequest{} }
func (m *DeleteDatasetRequest) String() string { return proto.CompactTextString(m) }
func (*DeleteDatasetRequest) ProtoMessage() {}
func (*DeleteDatasetRequest) Descriptor() ([]byte, []int) {
return fileDescriptor_datasets_6135563a56d7e4f8, []int{5}
}
func (m *DeleteDatasetRequest) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_DeleteDatasetRequest.Unmarshal(m, b)
}
func (m *DeleteDatasetRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_DeleteDatasetRequest.Marshal(b, m, deterministic)
}
func (dst *DeleteDatasetRequest) XXX_Merge(src proto.Message) {
xxx_messageInfo_DeleteDatasetRequest.Merge(dst, src)
}
func (m *DeleteDatasetRequest) XXX_Size() int {
return xxx_messageInfo_DeleteDatasetRequest.Size(m)
}
func (m *DeleteDatasetRequest) XXX_DiscardUnknown() {
xxx_messageInfo_DeleteDatasetRequest.DiscardUnknown(m)
}
var xxx_messageInfo_DeleteDatasetRequest proto.InternalMessageInfo
func (m *DeleteDatasetRequest) GetDatasetId() string {
if m != nil {
@ -213,13 +350,35 @@ func (m *DeleteDatasetRequest) GetDatasetId() string {
type UndeleteDatasetRequest struct {
// The ID of the dataset to be undeleted.
DatasetId string `protobuf:"bytes,1,opt,name=dataset_id,json=datasetId" json:"dataset_id,omitempty"`
DatasetId string `protobuf:"bytes,1,opt,name=dataset_id,json=datasetId,proto3" json:"dataset_id,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *UndeleteDatasetRequest) Reset() { *m = UndeleteDatasetRequest{} }
func (m *UndeleteDatasetRequest) String() string { return proto.CompactTextString(m) }
func (*UndeleteDatasetRequest) ProtoMessage() {}
func (*UndeleteDatasetRequest) Descriptor() ([]byte, []int) { return fileDescriptor2, []int{6} }
func (m *UndeleteDatasetRequest) Reset() { *m = UndeleteDatasetRequest{} }
func (m *UndeleteDatasetRequest) String() string { return proto.CompactTextString(m) }
func (*UndeleteDatasetRequest) ProtoMessage() {}
func (*UndeleteDatasetRequest) Descriptor() ([]byte, []int) {
return fileDescriptor_datasets_6135563a56d7e4f8, []int{6}
}
func (m *UndeleteDatasetRequest) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_UndeleteDatasetRequest.Unmarshal(m, b)
}
func (m *UndeleteDatasetRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_UndeleteDatasetRequest.Marshal(b, m, deterministic)
}
func (dst *UndeleteDatasetRequest) XXX_Merge(src proto.Message) {
xxx_messageInfo_UndeleteDatasetRequest.Merge(dst, src)
}
func (m *UndeleteDatasetRequest) XXX_Size() int {
return xxx_messageInfo_UndeleteDatasetRequest.Size(m)
}
func (m *UndeleteDatasetRequest) XXX_DiscardUnknown() {
xxx_messageInfo_UndeleteDatasetRequest.DiscardUnknown(m)
}
var xxx_messageInfo_UndeleteDatasetRequest proto.InternalMessageInfo
func (m *UndeleteDatasetRequest) GetDatasetId() string {
if m != nil {
@ -230,13 +389,35 @@ func (m *UndeleteDatasetRequest) GetDatasetId() string {
type GetDatasetRequest struct {
// The ID of the dataset.
DatasetId string `protobuf:"bytes,1,opt,name=dataset_id,json=datasetId" json:"dataset_id,omitempty"`
DatasetId string `protobuf:"bytes,1,opt,name=dataset_id,json=datasetId,proto3" json:"dataset_id,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *GetDatasetRequest) Reset() { *m = GetDatasetRequest{} }
func (m *GetDatasetRequest) String() string { return proto.CompactTextString(m) }
func (*GetDatasetRequest) ProtoMessage() {}
func (*GetDatasetRequest) Descriptor() ([]byte, []int) { return fileDescriptor2, []int{7} }
func (m *GetDatasetRequest) Reset() { *m = GetDatasetRequest{} }
func (m *GetDatasetRequest) String() string { return proto.CompactTextString(m) }
func (*GetDatasetRequest) ProtoMessage() {}
func (*GetDatasetRequest) Descriptor() ([]byte, []int) {
return fileDescriptor_datasets_6135563a56d7e4f8, []int{7}
}
func (m *GetDatasetRequest) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_GetDatasetRequest.Unmarshal(m, b)
}
func (m *GetDatasetRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_GetDatasetRequest.Marshal(b, m, deterministic)
}
func (dst *GetDatasetRequest) XXX_Merge(src proto.Message) {
xxx_messageInfo_GetDatasetRequest.Merge(dst, src)
}
func (m *GetDatasetRequest) XXX_Size() int {
return xxx_messageInfo_GetDatasetRequest.Size(m)
}
func (m *GetDatasetRequest) XXX_DiscardUnknown() {
xxx_messageInfo_GetDatasetRequest.DiscardUnknown(m)
}
var xxx_messageInfo_GetDatasetRequest proto.InternalMessageInfo
func (m *GetDatasetRequest) GetDatasetId() string {
if m != nil {
@ -264,8 +445,9 @@ var _ grpc.ClientConn
// is compatible with the grpc package it is being compiled against.
const _ = grpc.SupportPackageIsVersion4
// Client API for DatasetServiceV1 service
// DatasetServiceV1Client is the client API for DatasetServiceV1 service.
//
// For semantics around ctx use and closing/ending streaming RPCs, please refer to https://godoc.org/google.golang.org/grpc#ClientConn.NewStream.
type DatasetServiceV1Client interface {
// Lists datasets within a project.
//
@ -303,7 +485,7 @@ type DatasetServiceV1Client interface {
// For the definitions of datasets and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
DeleteDataset(ctx context.Context, in *DeleteDatasetRequest, opts ...grpc.CallOption) (*google_protobuf1.Empty, error)
DeleteDataset(ctx context.Context, in *DeleteDatasetRequest, opts ...grpc.CallOption) (*empty.Empty, error)
// Undeletes a dataset by restoring a dataset which was deleted via this API.
//
// For the definitions of datasets and other genomics resources, see
@ -321,7 +503,7 @@ type DatasetServiceV1Client interface {
//
// See <a href="/iam/docs/managing-policies#setting_a_policy">Setting a
// Policy</a> for more information.
SetIamPolicy(ctx context.Context, in *google_iam_v11.SetIamPolicyRequest, opts ...grpc.CallOption) (*google_iam_v1.Policy, error)
SetIamPolicy(ctx context.Context, in *v1.SetIamPolicyRequest, opts ...grpc.CallOption) (*v1.Policy, error)
// Gets the access control policy for the dataset. This is empty if the
// policy or resource does not exist.
//
@ -331,7 +513,7 @@ type DatasetServiceV1Client interface {
// For the definitions of datasets and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
GetIamPolicy(ctx context.Context, in *google_iam_v11.GetIamPolicyRequest, opts ...grpc.CallOption) (*google_iam_v1.Policy, error)
GetIamPolicy(ctx context.Context, in *v1.GetIamPolicyRequest, opts ...grpc.CallOption) (*v1.Policy, error)
// Returns permissions that a caller has on the specified resource.
// See <a href="/iam/docs/managing-policies#testing_permissions">Testing
// Permissions</a> for more information.
@ -339,7 +521,7 @@ type DatasetServiceV1Client interface {
// For the definitions of datasets and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
TestIamPermissions(ctx context.Context, in *google_iam_v11.TestIamPermissionsRequest, opts ...grpc.CallOption) (*google_iam_v11.TestIamPermissionsResponse, error)
TestIamPermissions(ctx context.Context, in *v1.TestIamPermissionsRequest, opts ...grpc.CallOption) (*v1.TestIamPermissionsResponse, error)
}
type datasetServiceV1Client struct {
@ -352,7 +534,7 @@ func NewDatasetServiceV1Client(cc *grpc.ClientConn) DatasetServiceV1Client {
func (c *datasetServiceV1Client) ListDatasets(ctx context.Context, in *ListDatasetsRequest, opts ...grpc.CallOption) (*ListDatasetsResponse, error) {
out := new(ListDatasetsResponse)
err := grpc.Invoke(ctx, "/google.genomics.v1.DatasetServiceV1/ListDatasets", in, out, c.cc, opts...)
err := c.cc.Invoke(ctx, "/google.genomics.v1.DatasetServiceV1/ListDatasets", in, out, opts...)
if err != nil {
return nil, err
}
@ -361,7 +543,7 @@ func (c *datasetServiceV1Client) ListDatasets(ctx context.Context, in *ListDatas
func (c *datasetServiceV1Client) CreateDataset(ctx context.Context, in *CreateDatasetRequest, opts ...grpc.CallOption) (*Dataset, error) {
out := new(Dataset)
err := grpc.Invoke(ctx, "/google.genomics.v1.DatasetServiceV1/CreateDataset", in, out, c.cc, opts...)
err := c.cc.Invoke(ctx, "/google.genomics.v1.DatasetServiceV1/CreateDataset", in, out, opts...)
if err != nil {
return nil, err
}
@ -370,7 +552,7 @@ func (c *datasetServiceV1Client) CreateDataset(ctx context.Context, in *CreateDa
func (c *datasetServiceV1Client) GetDataset(ctx context.Context, in *GetDatasetRequest, opts ...grpc.CallOption) (*Dataset, error) {
out := new(Dataset)
err := grpc.Invoke(ctx, "/google.genomics.v1.DatasetServiceV1/GetDataset", in, out, c.cc, opts...)
err := c.cc.Invoke(ctx, "/google.genomics.v1.DatasetServiceV1/GetDataset", in, out, opts...)
if err != nil {
return nil, err
}
@ -379,16 +561,16 @@ func (c *datasetServiceV1Client) GetDataset(ctx context.Context, in *GetDatasetR
func (c *datasetServiceV1Client) UpdateDataset(ctx context.Context, in *UpdateDatasetRequest, opts ...grpc.CallOption) (*Dataset, error) {
out := new(Dataset)
err := grpc.Invoke(ctx, "/google.genomics.v1.DatasetServiceV1/UpdateDataset", in, out, c.cc, opts...)
err := c.cc.Invoke(ctx, "/google.genomics.v1.DatasetServiceV1/UpdateDataset", in, out, opts...)
if err != nil {
return nil, err
}
return out, nil
}
func (c *datasetServiceV1Client) DeleteDataset(ctx context.Context, in *DeleteDatasetRequest, opts ...grpc.CallOption) (*google_protobuf1.Empty, error) {
out := new(google_protobuf1.Empty)
err := grpc.Invoke(ctx, "/google.genomics.v1.DatasetServiceV1/DeleteDataset", in, out, c.cc, opts...)
func (c *datasetServiceV1Client) DeleteDataset(ctx context.Context, in *DeleteDatasetRequest, opts ...grpc.CallOption) (*empty.Empty, error) {
out := new(empty.Empty)
err := c.cc.Invoke(ctx, "/google.genomics.v1.DatasetServiceV1/DeleteDataset", in, out, opts...)
if err != nil {
return nil, err
}
@ -397,42 +579,41 @@ func (c *datasetServiceV1Client) DeleteDataset(ctx context.Context, in *DeleteDa
func (c *datasetServiceV1Client) UndeleteDataset(ctx context.Context, in *UndeleteDatasetRequest, opts ...grpc.CallOption) (*Dataset, error) {
out := new(Dataset)
err := grpc.Invoke(ctx, "/google.genomics.v1.DatasetServiceV1/UndeleteDataset", in, out, c.cc, opts...)
err := c.cc.Invoke(ctx, "/google.genomics.v1.DatasetServiceV1/UndeleteDataset", in, out, opts...)
if err != nil {
return nil, err
}
return out, nil
}
func (c *datasetServiceV1Client) SetIamPolicy(ctx context.Context, in *google_iam_v11.SetIamPolicyRequest, opts ...grpc.CallOption) (*google_iam_v1.Policy, error) {
out := new(google_iam_v1.Policy)
err := grpc.Invoke(ctx, "/google.genomics.v1.DatasetServiceV1/SetIamPolicy", in, out, c.cc, opts...)
func (c *datasetServiceV1Client) SetIamPolicy(ctx context.Context, in *v1.SetIamPolicyRequest, opts ...grpc.CallOption) (*v1.Policy, error) {
out := new(v1.Policy)
err := c.cc.Invoke(ctx, "/google.genomics.v1.DatasetServiceV1/SetIamPolicy", in, out, opts...)
if err != nil {
return nil, err
}
return out, nil
}
func (c *datasetServiceV1Client) GetIamPolicy(ctx context.Context, in *google_iam_v11.GetIamPolicyRequest, opts ...grpc.CallOption) (*google_iam_v1.Policy, error) {
out := new(google_iam_v1.Policy)
err := grpc.Invoke(ctx, "/google.genomics.v1.DatasetServiceV1/GetIamPolicy", in, out, c.cc, opts...)
func (c *datasetServiceV1Client) GetIamPolicy(ctx context.Context, in *v1.GetIamPolicyRequest, opts ...grpc.CallOption) (*v1.Policy, error) {
out := new(v1.Policy)
err := c.cc.Invoke(ctx, "/google.genomics.v1.DatasetServiceV1/GetIamPolicy", in, out, opts...)
if err != nil {
return nil, err
}
return out, nil
}
func (c *datasetServiceV1Client) TestIamPermissions(ctx context.Context, in *google_iam_v11.TestIamPermissionsRequest, opts ...grpc.CallOption) (*google_iam_v11.TestIamPermissionsResponse, error) {
out := new(google_iam_v11.TestIamPermissionsResponse)
err := grpc.Invoke(ctx, "/google.genomics.v1.DatasetServiceV1/TestIamPermissions", in, out, c.cc, opts...)
func (c *datasetServiceV1Client) TestIamPermissions(ctx context.Context, in *v1.TestIamPermissionsRequest, opts ...grpc.CallOption) (*v1.TestIamPermissionsResponse, error) {
out := new(v1.TestIamPermissionsResponse)
err := c.cc.Invoke(ctx, "/google.genomics.v1.DatasetServiceV1/TestIamPermissions", in, out, opts...)
if err != nil {
return nil, err
}
return out, nil
}
// Server API for DatasetServiceV1 service
// DatasetServiceV1Server is the server API for DatasetServiceV1 service.
type DatasetServiceV1Server interface {
// Lists datasets within a project.
//
@ -470,7 +651,7 @@ type DatasetServiceV1Server interface {
// For the definitions of datasets and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
DeleteDataset(context.Context, *DeleteDatasetRequest) (*google_protobuf1.Empty, error)
DeleteDataset(context.Context, *DeleteDatasetRequest) (*empty.Empty, error)
// Undeletes a dataset by restoring a dataset which was deleted via this API.
//
// For the definitions of datasets and other genomics resources, see
@ -488,7 +669,7 @@ type DatasetServiceV1Server interface {
//
// See <a href="/iam/docs/managing-policies#setting_a_policy">Setting a
// Policy</a> for more information.
SetIamPolicy(context.Context, *google_iam_v11.SetIamPolicyRequest) (*google_iam_v1.Policy, error)
SetIamPolicy(context.Context, *v1.SetIamPolicyRequest) (*v1.Policy, error)
// Gets the access control policy for the dataset. This is empty if the
// policy or resource does not exist.
//
@ -498,7 +679,7 @@ type DatasetServiceV1Server interface {
// For the definitions of datasets and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
GetIamPolicy(context.Context, *google_iam_v11.GetIamPolicyRequest) (*google_iam_v1.Policy, error)
GetIamPolicy(context.Context, *v1.GetIamPolicyRequest) (*v1.Policy, error)
// Returns permissions that a caller has on the specified resource.
// See <a href="/iam/docs/managing-policies#testing_permissions">Testing
// Permissions</a> for more information.
@ -506,7 +687,7 @@ type DatasetServiceV1Server interface {
// For the definitions of datasets and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
TestIamPermissions(context.Context, *google_iam_v11.TestIamPermissionsRequest) (*google_iam_v11.TestIamPermissionsResponse, error)
TestIamPermissions(context.Context, *v1.TestIamPermissionsRequest) (*v1.TestIamPermissionsResponse, error)
}
func RegisterDatasetServiceV1Server(s *grpc.Server, srv DatasetServiceV1Server) {
@ -622,7 +803,7 @@ func _DatasetServiceV1_UndeleteDataset_Handler(srv interface{}, ctx context.Cont
}
func _DatasetServiceV1_SetIamPolicy_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
in := new(google_iam_v11.SetIamPolicyRequest)
in := new(v1.SetIamPolicyRequest)
if err := dec(in); err != nil {
return nil, err
}
@ -634,13 +815,13 @@ func _DatasetServiceV1_SetIamPolicy_Handler(srv interface{}, ctx context.Context
FullMethod: "/google.genomics.v1.DatasetServiceV1/SetIamPolicy",
}
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
return srv.(DatasetServiceV1Server).SetIamPolicy(ctx, req.(*google_iam_v11.SetIamPolicyRequest))
return srv.(DatasetServiceV1Server).SetIamPolicy(ctx, req.(*v1.SetIamPolicyRequest))
}
return interceptor(ctx, in, info, handler)
}
func _DatasetServiceV1_GetIamPolicy_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
in := new(google_iam_v11.GetIamPolicyRequest)
in := new(v1.GetIamPolicyRequest)
if err := dec(in); err != nil {
return nil, err
}
@ -652,13 +833,13 @@ func _DatasetServiceV1_GetIamPolicy_Handler(srv interface{}, ctx context.Context
FullMethod: "/google.genomics.v1.DatasetServiceV1/GetIamPolicy",
}
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
return srv.(DatasetServiceV1Server).GetIamPolicy(ctx, req.(*google_iam_v11.GetIamPolicyRequest))
return srv.(DatasetServiceV1Server).GetIamPolicy(ctx, req.(*v1.GetIamPolicyRequest))
}
return interceptor(ctx, in, info, handler)
}
func _DatasetServiceV1_TestIamPermissions_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
in := new(google_iam_v11.TestIamPermissionsRequest)
in := new(v1.TestIamPermissionsRequest)
if err := dec(in); err != nil {
return nil, err
}
@ -670,7 +851,7 @@ func _DatasetServiceV1_TestIamPermissions_Handler(srv interface{}, ctx context.C
FullMethod: "/google.genomics.v1.DatasetServiceV1/TestIamPermissions",
}
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
return srv.(DatasetServiceV1Server).TestIamPermissions(ctx, req.(*google_iam_v11.TestIamPermissionsRequest))
return srv.(DatasetServiceV1Server).TestIamPermissions(ctx, req.(*v1.TestIamPermissionsRequest))
}
return interceptor(ctx, in, info, handler)
}
@ -720,9 +901,11 @@ var _DatasetServiceV1_serviceDesc = grpc.ServiceDesc{
Metadata: "google/genomics/v1/datasets.proto",
}
func init() { proto.RegisterFile("google/genomics/v1/datasets.proto", fileDescriptor2) }
func init() {
proto.RegisterFile("google/genomics/v1/datasets.proto", fileDescriptor_datasets_6135563a56d7e4f8)
}
var fileDescriptor2 = []byte{
var fileDescriptor_datasets_6135563a56d7e4f8 = []byte{
// 786 bytes of a gzipped FileDescriptorProto
0x1f, 0x8b, 0x08, 0x00, 0x00, 0x00, 0x00, 0x00, 0x02, 0xff, 0xac, 0x56, 0xd1, 0x4e, 0x13, 0x4d,
0x14, 0xce, 0x16, 0xfe, 0x1f, 0x7a, 0xa0, 0xa0, 0x63, 0xc5, 0xda, 0x8a, 0x96, 0x8d, 0x42, 0xad,

117
vendor/google.golang.org/genproto/googleapis/genomics/v1/operations.pb.go generated vendored
View File

@ -1,52 +1,80 @@
// Code generated by protoc-gen-go. DO NOT EDIT.
// source: google/genomics/v1/operations.proto
package genomics
package genomics // import "google.golang.org/genproto/googleapis/genomics/v1"
import proto "github.com/golang/protobuf/proto"
import fmt "fmt"
import math "math"
import any "github.com/golang/protobuf/ptypes/any"
import timestamp "github.com/golang/protobuf/ptypes/timestamp"
import _ "google.golang.org/genproto/googleapis/api/annotations"
import google_protobuf5 "github.com/golang/protobuf/ptypes/any"
import google_protobuf6 "github.com/golang/protobuf/ptypes/timestamp"
// Reference imports to suppress errors if they are not otherwise used.
var _ = proto.Marshal
var _ = fmt.Errorf
var _ = math.Inf
// This is a compile-time assertion to ensure that this generated file
// is compatible with the proto package it is being compiled against.
// A compilation error at this line likely means your copy of the
// proto package needs to be updated.
const _ = proto.ProtoPackageIsVersion2 // please upgrade the proto package
// Metadata describing an [Operation][google.longrunning.Operation].
type OperationMetadata struct {
// The Google Cloud Project in which the job is scoped.
ProjectId string `protobuf:"bytes,1,opt,name=project_id,json=projectId" json:"project_id,omitempty"`
ProjectId string `protobuf:"bytes,1,opt,name=project_id,json=projectId,proto3" json:"project_id,omitempty"`
// The time at which the job was submitted to the Genomics service.
CreateTime *google_protobuf6.Timestamp `protobuf:"bytes,2,opt,name=create_time,json=createTime" json:"create_time,omitempty"`
CreateTime *timestamp.Timestamp `protobuf:"bytes,2,opt,name=create_time,json=createTime,proto3" json:"create_time,omitempty"`
// The time at which the job began to run.
StartTime *google_protobuf6.Timestamp `protobuf:"bytes,3,opt,name=start_time,json=startTime" json:"start_time,omitempty"`
StartTime *timestamp.Timestamp `protobuf:"bytes,3,opt,name=start_time,json=startTime,proto3" json:"start_time,omitempty"`
// The time at which the job stopped running.
EndTime *google_protobuf6.Timestamp `protobuf:"bytes,4,opt,name=end_time,json=endTime" json:"end_time,omitempty"`
EndTime *timestamp.Timestamp `protobuf:"bytes,4,opt,name=end_time,json=endTime,proto3" json:"end_time,omitempty"`
// The original request that started the operation. Note that this will be in
// current version of the API. If the operation was started with v1beta2 API
// and a GetOperation is performed on v1 API, a v1 request will be returned.
Request *google_protobuf5.Any `protobuf:"bytes,5,opt,name=request" json:"request,omitempty"`
Request *any.Any `protobuf:"bytes,5,opt,name=request,proto3" json:"request,omitempty"`
// Optional event messages that were generated during the job's execution.
// This also contains any warnings that were generated during import
// or export.
Events []*OperationEvent `protobuf:"bytes,6,rep,name=events" json:"events,omitempty"`
Events []*OperationEvent `protobuf:"bytes,6,rep,name=events,proto3" json:"events,omitempty"`
// This field is deprecated. Use `labels` instead. Optionally provided by the
// caller when submitting the request that creates the operation.
ClientId string `protobuf:"bytes,7,opt,name=client_id,json=clientId" json:"client_id,omitempty"`
ClientId string `protobuf:"bytes,7,opt,name=client_id,json=clientId,proto3" json:"client_id,omitempty"`
// Runtime metadata on this Operation.
RuntimeMetadata *google_protobuf5.Any `protobuf:"bytes,8,opt,name=runtime_metadata,json=runtimeMetadata" json:"runtime_metadata,omitempty"`
RuntimeMetadata *any.Any `protobuf:"bytes,8,opt,name=runtime_metadata,json=runtimeMetadata,proto3" json:"runtime_metadata,omitempty"`
// Optionally provided by the caller when submitting the request that creates
// the operation.
Labels map[string]string `protobuf:"bytes,9,rep,name=labels" json:"labels,omitempty" protobuf_key:"bytes,1,opt,name=key" protobuf_val:"bytes,2,opt,name=value"`
Labels map[string]string `protobuf:"bytes,9,rep,name=labels,proto3" json:"labels,omitempty" protobuf_key:"bytes,1,opt,name=key,proto3" protobuf_val:"bytes,2,opt,name=value,proto3"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *OperationMetadata) Reset() { *m = OperationMetadata{} }
func (m *OperationMetadata) String() string { return proto.CompactTextString(m) }
func (*OperationMetadata) ProtoMessage() {}
func (*OperationMetadata) Descriptor() ([]byte, []int) { return fileDescriptor3, []int{0} }
func (m *OperationMetadata) Reset() { *m = OperationMetadata{} }
func (m *OperationMetadata) String() string { return proto.CompactTextString(m) }
func (*OperationMetadata) ProtoMessage() {}
func (*OperationMetadata) Descriptor() ([]byte, []int) {
return fileDescriptor_operations_4f155d6eb213ff75, []int{0}
}
func (m *OperationMetadata) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_OperationMetadata.Unmarshal(m, b)
}
func (m *OperationMetadata) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_OperationMetadata.Marshal(b, m, deterministic)
}
func (dst *OperationMetadata) XXX_Merge(src proto.Message) {
xxx_messageInfo_OperationMetadata.Merge(dst, src)
}
func (m *OperationMetadata) XXX_Size() int {
return xxx_messageInfo_OperationMetadata.Size(m)
}
func (m *OperationMetadata) XXX_DiscardUnknown() {
xxx_messageInfo_OperationMetadata.DiscardUnknown(m)
}
var xxx_messageInfo_OperationMetadata proto.InternalMessageInfo
func (m *OperationMetadata) GetProjectId() string {
if m != nil {
@ -55,28 +83,28 @@ func (m *OperationMetadata) GetProjectId() string {
return ""
}
func (m *OperationMetadata) GetCreateTime() *google_protobuf6.Timestamp {
func (m *OperationMetadata) GetCreateTime() *timestamp.Timestamp {
if m != nil {
return m.CreateTime
}
return nil
}
func (m *OperationMetadata) GetStartTime() *google_protobuf6.Timestamp {
func (m *OperationMetadata) GetStartTime() *timestamp.Timestamp {
if m != nil {
return m.StartTime
}
return nil
}
func (m *OperationMetadata) GetEndTime() *google_protobuf6.Timestamp {
func (m *OperationMetadata) GetEndTime() *timestamp.Timestamp {
if m != nil {
return m.EndTime
}
return nil
}
func (m *OperationMetadata) GetRequest() *google_protobuf5.Any {
func (m *OperationMetadata) GetRequest() *any.Any {
if m != nil {
return m.Request
}
@ -97,7 +125,7 @@ func (m *OperationMetadata) GetClientId() string {
return ""
}
func (m *OperationMetadata) GetRuntimeMetadata() *google_protobuf5.Any {
func (m *OperationMetadata) GetRuntimeMetadata() *any.Any {
if m != nil {
return m.RuntimeMetadata
}
@ -114,27 +142,49 @@ func (m *OperationMetadata) GetLabels() map[string]string {
// An event that occurred during an [Operation][google.longrunning.Operation].
type OperationEvent struct {
// Optional time of when event started.
StartTime *google_protobuf6.Timestamp `protobuf:"bytes,1,opt,name=start_time,json=startTime" json:"start_time,omitempty"`
StartTime *timestamp.Timestamp `protobuf:"bytes,1,opt,name=start_time,json=startTime,proto3" json:"start_time,omitempty"`
// Optional time of when event finished. An event can have a start time and no
// finish time. If an event has a finish time, there must be a start time.
EndTime *google_protobuf6.Timestamp `protobuf:"bytes,2,opt,name=end_time,json=endTime" json:"end_time,omitempty"`
EndTime *timestamp.Timestamp `protobuf:"bytes,2,opt,name=end_time,json=endTime,proto3" json:"end_time,omitempty"`
// Required description of event.
Description string `protobuf:"bytes,3,opt,name=description" json:"description,omitempty"`
Description string `protobuf:"bytes,3,opt,name=description,proto3" json:"description,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *OperationEvent) Reset() { *m = OperationEvent{} }
func (m *OperationEvent) String() string { return proto.CompactTextString(m) }
func (*OperationEvent) ProtoMessage() {}
func (*OperationEvent) Descriptor() ([]byte, []int) { return fileDescriptor3, []int{1} }
func (m *OperationEvent) Reset() { *m = OperationEvent{} }
func (m *OperationEvent) String() string { return proto.CompactTextString(m) }
func (*OperationEvent) ProtoMessage() {}
func (*OperationEvent) Descriptor() ([]byte, []int) {
return fileDescriptor_operations_4f155d6eb213ff75, []int{1}
}
func (m *OperationEvent) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_OperationEvent.Unmarshal(m, b)
}
func (m *OperationEvent) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_OperationEvent.Marshal(b, m, deterministic)
}
func (dst *OperationEvent) XXX_Merge(src proto.Message) {
xxx_messageInfo_OperationEvent.Merge(dst, src)
}
func (m *OperationEvent) XXX_Size() int {
return xxx_messageInfo_OperationEvent.Size(m)
}
func (m *OperationEvent) XXX_DiscardUnknown() {
xxx_messageInfo_OperationEvent.DiscardUnknown(m)
}
func (m *OperationEvent) GetStartTime() *google_protobuf6.Timestamp {
var xxx_messageInfo_OperationEvent proto.InternalMessageInfo
func (m *OperationEvent) GetStartTime() *timestamp.Timestamp {
if m != nil {
return m.StartTime
}
return nil
}
func (m *OperationEvent) GetEndTime() *google_protobuf6.Timestamp {
func (m *OperationEvent) GetEndTime() *timestamp.Timestamp {
if m != nil {
return m.EndTime
}
@ -150,12 +200,15 @@ func (m *OperationEvent) GetDescription() string {
func init() {
proto.RegisterType((*OperationMetadata)(nil), "google.genomics.v1.OperationMetadata")
proto.RegisterMapType((map[string]string)(nil), "google.genomics.v1.OperationMetadata.LabelsEntry")
proto.RegisterType((*OperationEvent)(nil), "google.genomics.v1.OperationEvent")
}
func init() { proto.RegisterFile("google/genomics/v1/operations.proto", fileDescriptor3) }
func init() {
proto.RegisterFile("google/genomics/v1/operations.proto", fileDescriptor_operations_4f155d6eb213ff75)
}
var fileDescriptor3 = []byte{
var fileDescriptor_operations_4f155d6eb213ff75 = []byte{
// 456 bytes of a gzipped FileDescriptorProto
0x1f, 0x8b, 0x08, 0x00, 0x00, 0x00, 0x00, 0x00, 0x02, 0xff, 0x9c, 0x93, 0x41, 0x6f, 0xd3, 0x30,
0x14, 0xc7, 0xe5, 0x76, 0x6b, 0x9b, 0x17, 0x89, 0x0d, 0x6b, 0x42, 0xa1, 0x80, 0xa8, 0xca, 0xa5,

50
vendor/google.golang.org/genproto/googleapis/genomics/v1/position.pb.go generated vendored
View File

@ -1,7 +1,7 @@
// Code generated by protoc-gen-go. DO NOT EDIT.
// source: google/genomics/v1/position.proto
package genomics
package genomics // import "google.golang.org/genproto/googleapis/genomics/v1"
import proto "github.com/golang/protobuf/proto"
import fmt "fmt"
@ -13,24 +13,52 @@ var _ = proto.Marshal
var _ = fmt.Errorf
var _ = math.Inf
// This is a compile-time assertion to ensure that this generated file
// is compatible with the proto package it is being compiled against.
// A compilation error at this line likely means your copy of the
// proto package needs to be updated.
const _ = proto.ProtoPackageIsVersion2 // please upgrade the proto package
// An abstraction for referring to a genomic position, in relation to some
// already known reference. For now, represents a genomic position as a
// reference name, a base number on that reference (0-based), and a
// determination of forward or reverse strand.
type Position struct {
// The name of the reference in whatever reference set is being used.
ReferenceName string `protobuf:"bytes,1,opt,name=reference_name,json=referenceName" json:"reference_name,omitempty"`
ReferenceName string `protobuf:"bytes,1,opt,name=reference_name,json=referenceName,proto3" json:"reference_name,omitempty"`
// The 0-based offset from the start of the forward strand for that reference.
Position int64 `protobuf:"varint,2,opt,name=position" json:"position,omitempty"`
Position int64 `protobuf:"varint,2,opt,name=position,proto3" json:"position,omitempty"`
// Whether this position is on the reverse strand, as opposed to the forward
// strand.
ReverseStrand bool `protobuf:"varint,3,opt,name=reverse_strand,json=reverseStrand" json:"reverse_strand,omitempty"`
ReverseStrand bool `protobuf:"varint,3,opt,name=reverse_strand,json=reverseStrand,proto3" json:"reverse_strand,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *Position) Reset() { *m = Position{} }
func (m *Position) String() string { return proto.CompactTextString(m) }
func (*Position) ProtoMessage() {}
func (*Position) Descriptor() ([]byte, []int) { return fileDescriptor4, []int{0} }
func (m *Position) Reset() { *m = Position{} }
func (m *Position) String() string { return proto.CompactTextString(m) }
func (*Position) ProtoMessage() {}
func (*Position) Descriptor() ([]byte, []int) {
return fileDescriptor_position_a03b9f5830126916, []int{0}
}
func (m *Position) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_Position.Unmarshal(m, b)
}
func (m *Position) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_Position.Marshal(b, m, deterministic)
}
func (dst *Position) XXX_Merge(src proto.Message) {
xxx_messageInfo_Position.Merge(dst, src)
}
func (m *Position) XXX_Size() int {
return xxx_messageInfo_Position.Size(m)
}
func (m *Position) XXX_DiscardUnknown() {
xxx_messageInfo_Position.DiscardUnknown(m)
}
var xxx_messageInfo_Position proto.InternalMessageInfo
func (m *Position) GetReferenceName() string {
if m != nil {
@ -57,9 +85,11 @@ func init() {
proto.RegisterType((*Position)(nil), "google.genomics.v1.Position")
}
func init() { proto.RegisterFile("google/genomics/v1/position.proto", fileDescriptor4) }
func init() {
proto.RegisterFile("google/genomics/v1/position.proto", fileDescriptor_position_a03b9f5830126916)
}
var fileDescriptor4 = []byte{
var fileDescriptor_position_a03b9f5830126916 = []byte{
// 223 bytes of a gzipped FileDescriptorProto
0x1f, 0x8b, 0x08, 0x00, 0x00, 0x00, 0x00, 0x00, 0x02, 0xff, 0x64, 0x90, 0x41, 0x4b, 0x03, 0x31,
0x14, 0x84, 0x89, 0x05, 0x59, 0x03, 0xf5, 0xb0, 0x07, 0x59, 0x8a, 0x87, 0x55, 0x10, 0xf6, 0x94,

50
vendor/google.golang.org/genproto/googleapis/genomics/v1/range.pb.go generated vendored
View File

@ -1,7 +1,7 @@
// Code generated by protoc-gen-go. DO NOT EDIT.
// source: google/genomics/v1/range.proto
package genomics
package genomics // import "google.golang.org/genproto/googleapis/genomics/v1"
import proto "github.com/golang/protobuf/proto"
import fmt "fmt"
@ -13,21 +13,49 @@ var _ = proto.Marshal
var _ = fmt.Errorf
var _ = math.Inf
// This is a compile-time assertion to ensure that this generated file
// is compatible with the proto package it is being compiled against.
// A compilation error at this line likely means your copy of the
// proto package needs to be updated.
const _ = proto.ProtoPackageIsVersion2 // please upgrade the proto package
// A 0-based half-open genomic coordinate range for search requests.
type Range struct {
// The reference sequence name, for example `chr1`,
// `1`, or `chrX`.
ReferenceName string `protobuf:"bytes,1,opt,name=reference_name,json=referenceName" json:"reference_name,omitempty"`
ReferenceName string `protobuf:"bytes,1,opt,name=reference_name,json=referenceName,proto3" json:"reference_name,omitempty"`
// The start position of the range on the reference, 0-based inclusive.
Start int64 `protobuf:"varint,2,opt,name=start" json:"start,omitempty"`
Start int64 `protobuf:"varint,2,opt,name=start,proto3" json:"start,omitempty"`
// The end position of the range on the reference, 0-based exclusive.
End int64 `protobuf:"varint,3,opt,name=end" json:"end,omitempty"`
End int64 `protobuf:"varint,3,opt,name=end,proto3" json:"end,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *Range) Reset() { *m = Range{} }
func (m *Range) String() string { return proto.CompactTextString(m) }
func (*Range) ProtoMessage() {}
func (*Range) Descriptor() ([]byte, []int) { return fileDescriptor5, []int{0} }
func (m *Range) Reset() { *m = Range{} }
func (m *Range) String() string { return proto.CompactTextString(m) }
func (*Range) ProtoMessage() {}
func (*Range) Descriptor() ([]byte, []int) {
return fileDescriptor_range_ea4bc4104a5a55de, []int{0}
}
func (m *Range) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_Range.Unmarshal(m, b)
}
func (m *Range) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_Range.Marshal(b, m, deterministic)
}
func (dst *Range) XXX_Merge(src proto.Message) {
xxx_messageInfo_Range.Merge(dst, src)
}
func (m *Range) XXX_Size() int {
return xxx_messageInfo_Range.Size(m)
}
func (m *Range) XXX_DiscardUnknown() {
xxx_messageInfo_Range.DiscardUnknown(m)
}
var xxx_messageInfo_Range proto.InternalMessageInfo
func (m *Range) GetReferenceName() string {
if m != nil {
@ -54,9 +82,11 @@ func init() {
proto.RegisterType((*Range)(nil), "google.genomics.v1.Range")
}
func init() { proto.RegisterFile("google/genomics/v1/range.proto", fileDescriptor5) }
func init() {
proto.RegisterFile("google/genomics/v1/range.proto", fileDescriptor_range_ea4bc4104a5a55de)
}
var fileDescriptor5 = []byte{
var fileDescriptor_range_ea4bc4104a5a55de = []byte{
// 209 bytes of a gzipped FileDescriptorProto
0x1f, 0x8b, 0x08, 0x00, 0x00, 0x00, 0x00, 0x00, 0x02, 0xff, 0x64, 0x4f, 0x4d, 0x4b, 0xc4, 0x30,
0x10, 0x25, 0x96, 0x15, 0x0c, 0x28, 0x12, 0x44, 0x8a, 0x88, 0x2c, 0x82, 0xb0, 0xa7, 0x84, 0xe2,

119
vendor/google.golang.org/genproto/googleapis/genomics/v1/readalignment.pb.go generated vendored
View File

@ -1,39 +1,67 @@
// Code generated by protoc-gen-go. DO NOT EDIT.
// source: google/genomics/v1/readalignment.proto
package genomics
package genomics // import "google.golang.org/genproto/googleapis/genomics/v1"
import proto "github.com/golang/protobuf/proto"
import fmt "fmt"
import math "math"
import _struct "github.com/golang/protobuf/ptypes/struct"
import _ "google.golang.org/genproto/googleapis/api/annotations"
import google_protobuf3 "github.com/golang/protobuf/ptypes/struct"
// Reference imports to suppress errors if they are not otherwise used.
var _ = proto.Marshal
var _ = fmt.Errorf
var _ = math.Inf
// This is a compile-time assertion to ensure that this generated file
// is compatible with the proto package it is being compiled against.
// A compilation error at this line likely means your copy of the
// proto package needs to be updated.
const _ = proto.ProtoPackageIsVersion2 // please upgrade the proto package
// A linear alignment can be represented by one CIGAR string. Describes the
// mapped position and local alignment of the read to the reference.
type LinearAlignment struct {
// The position of this alignment.
Position *Position `protobuf:"bytes,1,opt,name=position" json:"position,omitempty"`
Position *Position `protobuf:"bytes,1,opt,name=position,proto3" json:"position,omitempty"`
// The mapping quality of this alignment. Represents how likely
// the read maps to this position as opposed to other locations.
//
// Specifically, this is -10 log10 Pr(mapping position is wrong), rounded to
// the nearest integer.
MappingQuality int32 `protobuf:"varint,2,opt,name=mapping_quality,json=mappingQuality" json:"mapping_quality,omitempty"`
MappingQuality int32 `protobuf:"varint,2,opt,name=mapping_quality,json=mappingQuality,proto3" json:"mapping_quality,omitempty"`
// Represents the local alignment of this sequence (alignment matches, indels,
// etc) against the reference.
Cigar []*CigarUnit `protobuf:"bytes,3,rep,name=cigar" json:"cigar,omitempty"`
Cigar []*CigarUnit `protobuf:"bytes,3,rep,name=cigar,proto3" json:"cigar,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *LinearAlignment) Reset() { *m = LinearAlignment{} }
func (m *LinearAlignment) String() string { return proto.CompactTextString(m) }
func (*LinearAlignment) ProtoMessage() {}
func (*LinearAlignment) Descriptor() ([]byte, []int) { return fileDescriptor6, []int{0} }
func (m *LinearAlignment) Reset() { *m = LinearAlignment{} }
func (m *LinearAlignment) String() string { return proto.CompactTextString(m) }
func (*LinearAlignment) ProtoMessage() {}
func (*LinearAlignment) Descriptor() ([]byte, []int) {
return fileDescriptor_readalignment_b0fdaef32d6e6f98, []int{0}
}
func (m *LinearAlignment) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_LinearAlignment.Unmarshal(m, b)
}
func (m *LinearAlignment) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_LinearAlignment.Marshal(b, m, deterministic)
}
func (dst *LinearAlignment) XXX_Merge(src proto.Message) {
xxx_messageInfo_LinearAlignment.Merge(dst, src)
}
func (m *LinearAlignment) XXX_Size() int {
return xxx_messageInfo_LinearAlignment.Size(m)
}
func (m *LinearAlignment) XXX_DiscardUnknown() {
xxx_messageInfo_LinearAlignment.DiscardUnknown(m)
}
var xxx_messageInfo_LinearAlignment proto.InternalMessageInfo
func (m *LinearAlignment) GetPosition() *Position {
if m != nil {
@ -141,42 +169,42 @@ func (m *LinearAlignment) GetCigar() []*CigarUnit {
type Read struct {
// The server-generated read ID, unique across all reads. This is different
// from the `fragmentName`.
Id string `protobuf:"bytes,1,opt,name=id" json:"id,omitempty"`
Id string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
// The ID of the read group this read belongs to. A read belongs to exactly
// one read group. This is a server-generated ID which is distinct from SAM's
// RG tag (for that value, see
// [ReadGroup.name][google.genomics.v1.ReadGroup.name]).
ReadGroupId string `protobuf:"bytes,2,opt,name=read_group_id,json=readGroupId" json:"read_group_id,omitempty"`
ReadGroupId string `protobuf:"bytes,2,opt,name=read_group_id,json=readGroupId,proto3" json:"read_group_id,omitempty"`
// The ID of the read group set this read belongs to. A read belongs to
// exactly one read group set.
ReadGroupSetId string `protobuf:"bytes,3,opt,name=read_group_set_id,json=readGroupSetId" json:"read_group_set_id,omitempty"`
ReadGroupSetId string `protobuf:"bytes,3,opt,name=read_group_set_id,json=readGroupSetId,proto3" json:"read_group_set_id,omitempty"`
// The fragment name. Equivalent to QNAME (query template name) in SAM.
FragmentName string `protobuf:"bytes,4,opt,name=fragment_name,json=fragmentName" json:"fragment_name,omitempty"`
FragmentName string `protobuf:"bytes,4,opt,name=fragment_name,json=fragmentName,proto3" json:"fragment_name,omitempty"`
// The orientation and the distance between reads from the fragment are
// consistent with the sequencing protocol (SAM flag 0x2).
ProperPlacement bool `protobuf:"varint,5,opt,name=proper_placement,json=properPlacement" json:"proper_placement,omitempty"`
ProperPlacement bool `protobuf:"varint,5,opt,name=proper_placement,json=properPlacement,proto3" json:"proper_placement,omitempty"`
// The fragment is a PCR or optical duplicate (SAM flag 0x400).
DuplicateFragment bool `protobuf:"varint,6,opt,name=duplicate_fragment,json=duplicateFragment" json:"duplicate_fragment,omitempty"`
DuplicateFragment bool `protobuf:"varint,6,opt,name=duplicate_fragment,json=duplicateFragment,proto3" json:"duplicate_fragment,omitempty"`
// The observed length of the fragment, equivalent to TLEN in SAM.
FragmentLength int32 `protobuf:"varint,7,opt,name=fragment_length,json=fragmentLength" json:"fragment_length,omitempty"`
FragmentLength int32 `protobuf:"varint,7,opt,name=fragment_length,json=fragmentLength,proto3" json:"fragment_length,omitempty"`
// The read number in sequencing. 0-based and less than numberReads. This
// field replaces SAM flag 0x40 and 0x80.
ReadNumber int32 `protobuf:"varint,8,opt,name=read_number,json=readNumber" json:"read_number,omitempty"`
ReadNumber int32 `protobuf:"varint,8,opt,name=read_number,json=readNumber,proto3" json:"read_number,omitempty"`
// The number of reads in the fragment (extension to SAM flag 0x1).
NumberReads int32 `protobuf:"varint,9,opt,name=number_reads,json=numberReads" json:"number_reads,omitempty"`
NumberReads int32 `protobuf:"varint,9,opt,name=number_reads,json=numberReads,proto3" json:"number_reads,omitempty"`
// Whether this read did not pass filters, such as platform or vendor quality
// controls (SAM flag 0x200).
FailedVendorQualityChecks bool `protobuf:"varint,10,opt,name=failed_vendor_quality_checks,json=failedVendorQualityChecks" json:"failed_vendor_quality_checks,omitempty"`
FailedVendorQualityChecks bool `protobuf:"varint,10,opt,name=failed_vendor_quality_checks,json=failedVendorQualityChecks,proto3" json:"failed_vendor_quality_checks,omitempty"`
// The linear alignment for this alignment record. This field is null for
// unmapped reads.
Alignment *LinearAlignment `protobuf:"bytes,11,opt,name=alignment" json:"alignment,omitempty"`
Alignment *LinearAlignment `protobuf:"bytes,11,opt,name=alignment,proto3" json:"alignment,omitempty"`
// Whether this alignment is secondary. Equivalent to SAM flag 0x100.
// A secondary alignment represents an alternative to the primary alignment
// for this read. Aligners may return secondary alignments if a read can map
// ambiguously to multiple coordinates in the genome. By convention, each read
// has one and only one alignment where both `secondaryAlignment`
// and `supplementaryAlignment` are false.
SecondaryAlignment bool `protobuf:"varint,12,opt,name=secondary_alignment,json=secondaryAlignment" json:"secondary_alignment,omitempty"`
SecondaryAlignment bool `protobuf:"varint,12,opt,name=secondary_alignment,json=secondaryAlignment,proto3" json:"secondary_alignment,omitempty"`
// Whether this alignment is supplementary. Equivalent to SAM flag 0x800.
// Supplementary alignments are used in the representation of a chimeric
// alignment. In a chimeric alignment, a read is split into multiple
@ -188,7 +216,7 @@ type Read struct {
// will be hard clipped. The `alignedSequence` and
// `alignedQuality` fields in the alignment record will only
// represent the bases for its respective linear alignment.
SupplementaryAlignment bool `protobuf:"varint,13,opt,name=supplementary_alignment,json=supplementaryAlignment" json:"supplementary_alignment,omitempty"`
SupplementaryAlignment bool `protobuf:"varint,13,opt,name=supplementary_alignment,json=supplementaryAlignment,proto3" json:"supplementary_alignment,omitempty"`
// The bases of the read sequence contained in this alignment record,
// **without CIGAR operations applied** (equivalent to SEQ in SAM).
// `alignedSequence` and `alignedQuality` may be
@ -196,7 +224,7 @@ type Read struct {
// alignment is part of a chimeric alignment, or if the read was trimmed. When
// this occurs, the CIGAR for this read will begin/end with a hard clip
// operator that will indicate the length of the excised sequence.
AlignedSequence string `protobuf:"bytes,14,opt,name=aligned_sequence,json=alignedSequence" json:"aligned_sequence,omitempty"`
AlignedSequence string `protobuf:"bytes,14,opt,name=aligned_sequence,json=alignedSequence,proto3" json:"aligned_sequence,omitempty"`
// The quality of the read sequence contained in this alignment record
// (equivalent to QUAL in SAM).
// `alignedSequence` and `alignedQuality` may be shorter than the full read
@ -204,20 +232,42 @@ type Read struct {
// chimeric alignment, or if the read was trimmed. When this occurs, the CIGAR
// for this read will begin/end with a hard clip operator that will indicate
// the length of the excised sequence.
AlignedQuality []int32 `protobuf:"varint,15,rep,packed,name=aligned_quality,json=alignedQuality" json:"aligned_quality,omitempty"`
AlignedQuality []int32 `protobuf:"varint,15,rep,packed,name=aligned_quality,json=alignedQuality,proto3" json:"aligned_quality,omitempty"`
// The mapping of the primary alignment of the
// `(readNumber+1)%numberReads` read in the fragment. It replaces
// mate position and mate strand in SAM.
NextMatePosition *Position `protobuf:"bytes,16,opt,name=next_mate_position,json=nextMatePosition" json:"next_mate_position,omitempty"`
NextMatePosition *Position `protobuf:"bytes,16,opt,name=next_mate_position,json=nextMatePosition,proto3" json:"next_mate_position,omitempty"`
// A map of additional read alignment information. This must be of the form
// map<string, string[]> (string key mapping to a list of string values).
Info map[string]*google_protobuf3.ListValue `protobuf:"bytes,17,rep,name=info" json:"info,omitempty" protobuf_key:"bytes,1,opt,name=key" protobuf_val:"bytes,2,opt,name=value"`
Info map[string]*_struct.ListValue `protobuf:"bytes,17,rep,name=info,proto3" json:"info,omitempty" protobuf_key:"bytes,1,opt,name=key,proto3" protobuf_val:"bytes,2,opt,name=value,proto3"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *Read) Reset() { *m = Read{} }
func (m *Read) String() string { return proto.CompactTextString(m) }
func (*Read) ProtoMessage() {}
func (*Read) Descriptor() ([]byte, []int) { return fileDescriptor6, []int{1} }
func (m *Read) Reset() { *m = Read{} }
func (m *Read) String() string { return proto.CompactTextString(m) }
func (*Read) ProtoMessage() {}
func (*Read) Descriptor() ([]byte, []int) {
return fileDescriptor_readalignment_b0fdaef32d6e6f98, []int{1}
}
func (m *Read) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_Read.Unmarshal(m, b)
}
func (m *Read) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_Read.Marshal(b, m, deterministic)
}
func (dst *Read) XXX_Merge(src proto.Message) {
xxx_messageInfo_Read.Merge(dst, src)
}
func (m *Read) XXX_Size() int {
return xxx_messageInfo_Read.Size(m)
}
func (m *Read) XXX_DiscardUnknown() {
xxx_messageInfo_Read.DiscardUnknown(m)
}
var xxx_messageInfo_Read proto.InternalMessageInfo
func (m *Read) GetId() string {
if m != nil {
@ -331,7 +381,7 @@ func (m *Read) GetNextMatePosition() *Position {
return nil
}
func (m *Read) GetInfo() map[string]*google_protobuf3.ListValue {
func (m *Read) GetInfo() map[string]*_struct.ListValue {
if m != nil {
return m.Info
}
@ -341,11 +391,14 @@ func (m *Read) GetInfo() map[string]*google_protobuf3.ListValue {
func init() {
proto.RegisterType((*LinearAlignment)(nil), "google.genomics.v1.LinearAlignment")
proto.RegisterType((*Read)(nil), "google.genomics.v1.Read")
proto.RegisterMapType((map[string]*_struct.ListValue)(nil), "google.genomics.v1.Read.InfoEntry")
}
func init() { proto.RegisterFile("google/genomics/v1/readalignment.proto", fileDescriptor6) }
func init() {
proto.RegisterFile("google/genomics/v1/readalignment.proto", fileDescriptor_readalignment_b0fdaef32d6e6f98)
}
var fileDescriptor6 = []byte{
var fileDescriptor_readalignment_b0fdaef32d6e6f98 = []byte{
// 683 bytes of a gzipped FileDescriptorProto
0x1f, 0x8b, 0x08, 0x00, 0x00, 0x00, 0x00, 0x00, 0x02, 0xff, 0x8c, 0x94, 0xcd, 0x4e, 0xdb, 0x4a,
0x14, 0xc7, 0xe5, 0x84, 0x70, 0xc9, 0x09, 0x24, 0x61, 0xae, 0xc4, 0xf5, 0x8d, 0xb8, 0xb7, 0x21,

147
vendor/google.golang.org/genproto/googleapis/genomics/v1/readgroup.pb.go generated vendored
View File

@ -1,54 +1,82 @@
// Code generated by protoc-gen-go. DO NOT EDIT.
// source: google/genomics/v1/readgroup.proto
package genomics
package genomics // import "google.golang.org/genproto/googleapis/genomics/v1"
import proto "github.com/golang/protobuf/proto"
import fmt "fmt"
import math "math"
import _struct "github.com/golang/protobuf/ptypes/struct"
import _ "google.golang.org/genproto/googleapis/api/annotations"
import google_protobuf3 "github.com/golang/protobuf/ptypes/struct"
// Reference imports to suppress errors if they are not otherwise used.
var _ = proto.Marshal
var _ = fmt.Errorf
var _ = math.Inf
// This is a compile-time assertion to ensure that this generated file
// is compatible with the proto package it is being compiled against.
// A compilation error at this line likely means your copy of the
// proto package needs to be updated.
const _ = proto.ProtoPackageIsVersion2 // please upgrade the proto package
// A read group is all the data that's processed the same way by the sequencer.
type ReadGroup struct {
// The server-generated read group ID, unique for all read groups.
// Note: This is different than the @RG ID field in the SAM spec. For that
// value, see [name][google.genomics.v1.ReadGroup.name].
Id string `protobuf:"bytes,1,opt,name=id" json:"id,omitempty"`
Id string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
// The dataset to which this read group belongs.
DatasetId string `protobuf:"bytes,2,opt,name=dataset_id,json=datasetId" json:"dataset_id,omitempty"`
DatasetId string `protobuf:"bytes,2,opt,name=dataset_id,json=datasetId,proto3" json:"dataset_id,omitempty"`
// The read group name. This corresponds to the @RG ID field in the SAM spec.
Name string `protobuf:"bytes,3,opt,name=name" json:"name,omitempty"`
Name string `protobuf:"bytes,3,opt,name=name,proto3" json:"name,omitempty"`
// A free-form text description of this read group.
Description string `protobuf:"bytes,4,opt,name=description" json:"description,omitempty"`
Description string `protobuf:"bytes,4,opt,name=description,proto3" json:"description,omitempty"`
// A client-supplied sample identifier for the reads in this read group.
SampleId string `protobuf:"bytes,5,opt,name=sample_id,json=sampleId" json:"sample_id,omitempty"`
SampleId string `protobuf:"bytes,5,opt,name=sample_id,json=sampleId,proto3" json:"sample_id,omitempty"`
// The experiment used to generate this read group.
Experiment *ReadGroup_Experiment `protobuf:"bytes,6,opt,name=experiment" json:"experiment,omitempty"`
Experiment *ReadGroup_Experiment `protobuf:"bytes,6,opt,name=experiment,proto3" json:"experiment,omitempty"`
// The predicted insert size of this read group. The insert size is the length
// the sequenced DNA fragment from end-to-end, not including the adapters.
PredictedInsertSize int32 `protobuf:"varint,7,opt,name=predicted_insert_size,json=predictedInsertSize" json:"predicted_insert_size,omitempty"`
PredictedInsertSize int32 `protobuf:"varint,7,opt,name=predicted_insert_size,json=predictedInsertSize,proto3" json:"predicted_insert_size,omitempty"`
// The programs used to generate this read group. Programs are always
// identical for all read groups within a read group set. For this reason,
// only the first read group in a returned set will have this field
// populated.
Programs []*ReadGroup_Program `protobuf:"bytes,10,rep,name=programs" json:"programs,omitempty"`
Programs []*ReadGroup_Program `protobuf:"bytes,10,rep,name=programs,proto3" json:"programs,omitempty"`
// The reference set the reads in this read group are aligned to.
ReferenceSetId string `protobuf:"bytes,11,opt,name=reference_set_id,json=referenceSetId" json:"reference_set_id,omitempty"`
ReferenceSetId string `protobuf:"bytes,11,opt,name=reference_set_id,json=referenceSetId,proto3" json:"reference_set_id,omitempty"`
// A map of additional read group information. This must be of the form
// map<string, string[]> (string key mapping to a list of string values).
Info map[string]*google_protobuf3.ListValue `protobuf:"bytes,12,rep,name=info" json:"info,omitempty" protobuf_key:"bytes,1,opt,name=key" protobuf_val:"bytes,2,opt,name=value"`
Info map[string]*_struct.ListValue `protobuf:"bytes,12,rep,name=info,proto3" json:"info,omitempty" protobuf_key:"bytes,1,opt,name=key,proto3" protobuf_val:"bytes,2,opt,name=value,proto3"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *ReadGroup) Reset() { *m = ReadGroup{} }
func (m *ReadGroup) String() string { return proto.CompactTextString(m) }
func (*ReadGroup) ProtoMessage() {}
func (*ReadGroup) Descriptor() ([]byte, []int) { return fileDescriptor7, []int{0} }
func (m *ReadGroup) Reset() { *m = ReadGroup{} }
func (m *ReadGroup) String() string { return proto.CompactTextString(m) }
func (*ReadGroup) ProtoMessage() {}
func (*ReadGroup) Descriptor() ([]byte, []int) {
return fileDescriptor_readgroup_d1ee37f21a1efad6, []int{0}
}
func (m *ReadGroup) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_ReadGroup.Unmarshal(m, b)
}
func (m *ReadGroup) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_ReadGroup.Marshal(b, m, deterministic)
}
func (dst *ReadGroup) XXX_Merge(src proto.Message) {
xxx_messageInfo_ReadGroup.Merge(dst, src)
}
func (m *ReadGroup) XXX_Size() int {
return xxx_messageInfo_ReadGroup.Size(m)
}
func (m *ReadGroup) XXX_DiscardUnknown() {
xxx_messageInfo_ReadGroup.DiscardUnknown(m)
}
var xxx_messageInfo_ReadGroup proto.InternalMessageInfo
func (m *ReadGroup) GetId() string {
if m != nil {
@ -113,7 +141,7 @@ func (m *ReadGroup) GetReferenceSetId() string {
return ""
}
func (m *ReadGroup) GetInfo() map[string]*google_protobuf3.ListValue {
func (m *ReadGroup) GetInfo() map[string]*_struct.ListValue {
if m != nil {
return m.Info
}
@ -125,22 +153,44 @@ type ReadGroup_Experiment struct {
// fragments which have been prepared for sequencing from a sample. This
// field is important for quality control as error or bias can be introduced
// during sample preparation.
LibraryId string `protobuf:"bytes,1,opt,name=library_id,json=libraryId" json:"library_id,omitempty"`
LibraryId string `protobuf:"bytes,1,opt,name=library_id,json=libraryId,proto3" json:"library_id,omitempty"`
// The platform unit used as part of this experiment, for example
// flowcell-barcode.lane for Illumina or slide for SOLiD. Corresponds to the
// @RG PU field in the SAM spec.
PlatformUnit string `protobuf:"bytes,2,opt,name=platform_unit,json=platformUnit" json:"platform_unit,omitempty"`
PlatformUnit string `protobuf:"bytes,2,opt,name=platform_unit,json=platformUnit,proto3" json:"platform_unit,omitempty"`
// The sequencing center used as part of this experiment.
SequencingCenter string `protobuf:"bytes,3,opt,name=sequencing_center,json=sequencingCenter" json:"sequencing_center,omitempty"`
SequencingCenter string `protobuf:"bytes,3,opt,name=sequencing_center,json=sequencingCenter,proto3" json:"sequencing_center,omitempty"`
// The instrument model used as part of this experiment. This maps to
// sequencing technology in the SAM spec.
InstrumentModel string `protobuf:"bytes,4,opt,name=instrument_model,json=instrumentModel" json:"instrument_model,omitempty"`
InstrumentModel string `protobuf:"bytes,4,opt,name=instrument_model,json=instrumentModel,proto3" json:"instrument_model,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *ReadGroup_Experiment) Reset() { *m = ReadGroup_Experiment{} }
func (m *ReadGroup_Experiment) String() string { return proto.CompactTextString(m) }
func (*ReadGroup_Experiment) ProtoMessage() {}
func (*ReadGroup_Experiment) Descriptor() ([]byte, []int) { return fileDescriptor7, []int{0, 0} }
func (m *ReadGroup_Experiment) Reset() { *m = ReadGroup_Experiment{} }
func (m *ReadGroup_Experiment) String() string { return proto.CompactTextString(m) }
func (*ReadGroup_Experiment) ProtoMessage() {}
func (*ReadGroup_Experiment) Descriptor() ([]byte, []int) {
return fileDescriptor_readgroup_d1ee37f21a1efad6, []int{0, 0}
}
func (m *ReadGroup_Experiment) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_ReadGroup_Experiment.Unmarshal(m, b)
}
func (m *ReadGroup_Experiment) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_ReadGroup_Experiment.Marshal(b, m, deterministic)
}
func (dst *ReadGroup_Experiment) XXX_Merge(src proto.Message) {
xxx_messageInfo_ReadGroup_Experiment.Merge(dst, src)
}
func (m *ReadGroup_Experiment) XXX_Size() int {
return xxx_messageInfo_ReadGroup_Experiment.Size(m)
}
func (m *ReadGroup_Experiment) XXX_DiscardUnknown() {
xxx_messageInfo_ReadGroup_Experiment.DiscardUnknown(m)
}
var xxx_messageInfo_ReadGroup_Experiment proto.InternalMessageInfo
func (m *ReadGroup_Experiment) GetLibraryId() string {
if m != nil {
@ -172,23 +222,45 @@ func (m *ReadGroup_Experiment) GetInstrumentModel() string {
type ReadGroup_Program struct {
// The command line used to run this program.
CommandLine string `protobuf:"bytes,1,opt,name=command_line,json=commandLine" json:"command_line,omitempty"`
CommandLine string `protobuf:"bytes,1,opt,name=command_line,json=commandLine,proto3" json:"command_line,omitempty"`
// The user specified locally unique ID of the program. Used along with
// `prevProgramId` to define an ordering between programs.
Id string `protobuf:"bytes,2,opt,name=id" json:"id,omitempty"`
Id string `protobuf:"bytes,2,opt,name=id,proto3" json:"id,omitempty"`
// The display name of the program. This is typically the colloquial name of
// the tool used, for example 'bwa' or 'picard'.
Name string `protobuf:"bytes,3,opt,name=name" json:"name,omitempty"`
Name string `protobuf:"bytes,3,opt,name=name,proto3" json:"name,omitempty"`
// The ID of the program run before this one.
PrevProgramId string `protobuf:"bytes,4,opt,name=prev_program_id,json=prevProgramId" json:"prev_program_id,omitempty"`
PrevProgramId string `protobuf:"bytes,4,opt,name=prev_program_id,json=prevProgramId,proto3" json:"prev_program_id,omitempty"`
// The version of the program run.
Version string `protobuf:"bytes,5,opt,name=version" json:"version,omitempty"`
Version string `protobuf:"bytes,5,opt,name=version,proto3" json:"version,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *ReadGroup_Program) Reset() { *m = ReadGroup_Program{} }
func (m *ReadGroup_Program) String() string { return proto.CompactTextString(m) }
func (*ReadGroup_Program) ProtoMessage() {}
func (*ReadGroup_Program) Descriptor() ([]byte, []int) { return fileDescriptor7, []int{0, 1} }
func (m *ReadGroup_Program) Reset() { *m = ReadGroup_Program{} }
func (m *ReadGroup_Program) String() string { return proto.CompactTextString(m) }
func (*ReadGroup_Program) ProtoMessage() {}
func (*ReadGroup_Program) Descriptor() ([]byte, []int) {
return fileDescriptor_readgroup_d1ee37f21a1efad6, []int{0, 1}
}
func (m *ReadGroup_Program) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_ReadGroup_Program.Unmarshal(m, b)
}
func (m *ReadGroup_Program) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_ReadGroup_Program.Marshal(b, m, deterministic)
}
func (dst *ReadGroup_Program) XXX_Merge(src proto.Message) {
xxx_messageInfo_ReadGroup_Program.Merge(dst, src)
}
func (m *ReadGroup_Program) XXX_Size() int {
return xxx_messageInfo_ReadGroup_Program.Size(m)
}
func (m *ReadGroup_Program) XXX_DiscardUnknown() {
xxx_messageInfo_ReadGroup_Program.DiscardUnknown(m)
}
var xxx_messageInfo_ReadGroup_Program proto.InternalMessageInfo
func (m *ReadGroup_Program) GetCommandLine() string {
if m != nil {
@ -227,13 +299,16 @@ func (m *ReadGroup_Program) GetVersion() string {
func init() {
proto.RegisterType((*ReadGroup)(nil), "google.genomics.v1.ReadGroup")
proto.RegisterMapType((map[string]*_struct.ListValue)(nil), "google.genomics.v1.ReadGroup.InfoEntry")
proto.RegisterType((*ReadGroup_Experiment)(nil), "google.genomics.v1.ReadGroup.Experiment")
proto.RegisterType((*ReadGroup_Program)(nil), "google.genomics.v1.ReadGroup.Program")
}
func init() { proto.RegisterFile("google/genomics/v1/readgroup.proto", fileDescriptor7) }
func init() {
proto.RegisterFile("google/genomics/v1/readgroup.proto", fileDescriptor_readgroup_d1ee37f21a1efad6)
}
var fileDescriptor7 = []byte{
var fileDescriptor_readgroup_d1ee37f21a1efad6 = []byte{
// 585 bytes of a gzipped FileDescriptorProto
0x1f, 0x8b, 0x08, 0x00, 0x00, 0x00, 0x00, 0x00, 0x02, 0xff, 0x7c, 0x54, 0xcb, 0x6e, 0xd4, 0x30,
0x14, 0x55, 0xa6, 0xcf, 0xb9, 0xd3, 0xc7, 0x60, 0x04, 0x8a, 0x06, 0x90, 0x86, 0x22, 0x60, 0x10,

63
vendor/google.golang.org/genproto/googleapis/genomics/v1/readgroupset.pb.go generated vendored
View File

@ -1,19 +1,25 @@
// Code generated by protoc-gen-go. DO NOT EDIT.
// source: google/genomics/v1/readgroupset.proto
package genomics
package genomics // import "google.golang.org/genproto/googleapis/genomics/v1"
import proto "github.com/golang/protobuf/proto"
import fmt "fmt"
import math "math"
import _struct "github.com/golang/protobuf/ptypes/struct"
import _ "google.golang.org/genproto/googleapis/api/annotations"
import google_protobuf3 "github.com/golang/protobuf/ptypes/struct"
// Reference imports to suppress errors if they are not otherwise used.
var _ = proto.Marshal
var _ = fmt.Errorf
var _ = math.Inf
// This is a compile-time assertion to ensure that this generated file
// is compatible with the proto package it is being compiled against.
// A compilation error at this line likely means your copy of the
// proto package needs to be updated.
const _ = proto.ProtoPackageIsVersion2 // please upgrade the proto package
// A read group set is a logical collection of read groups, which are
// collections of reads produced by a sequencer. A read group set typically
// models reads corresponding to one sample, sequenced one way, and aligned one
@ -27,27 +33,49 @@ var _ = math.Inf
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
type ReadGroupSet struct {
// The server-generated read group set ID, unique for all read group sets.
Id string `protobuf:"bytes,1,opt,name=id" json:"id,omitempty"`
Id string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
// The dataset to which this read group set belongs.
DatasetId string `protobuf:"bytes,2,opt,name=dataset_id,json=datasetId" json:"dataset_id,omitempty"`
DatasetId string `protobuf:"bytes,2,opt,name=dataset_id,json=datasetId,proto3" json:"dataset_id,omitempty"`
// The reference set to which the reads in this read group set are aligned.
ReferenceSetId string `protobuf:"bytes,3,opt,name=reference_set_id,json=referenceSetId" json:"reference_set_id,omitempty"`
ReferenceSetId string `protobuf:"bytes,3,opt,name=reference_set_id,json=referenceSetId,proto3" json:"reference_set_id,omitempty"`
// The read group set name. By default this will be initialized to the sample
// name of the sequenced data contained in this set.
Name string `protobuf:"bytes,4,opt,name=name" json:"name,omitempty"`
Name string `protobuf:"bytes,4,opt,name=name,proto3" json:"name,omitempty"`
// The filename of the original source file for this read group set, if any.
Filename string `protobuf:"bytes,5,opt,name=filename" json:"filename,omitempty"`
Filename string `protobuf:"bytes,5,opt,name=filename,proto3" json:"filename,omitempty"`
// The read groups in this set. There are typically 1-10 read groups in a read
// group set.
ReadGroups []*ReadGroup `protobuf:"bytes,6,rep,name=read_groups,json=readGroups" json:"read_groups,omitempty"`
ReadGroups []*ReadGroup `protobuf:"bytes,6,rep,name=read_groups,json=readGroups,proto3" json:"read_groups,omitempty"`
// A map of additional read group set information.
Info map[string]*google_protobuf3.ListValue `protobuf:"bytes,7,rep,name=info" json:"info,omitempty" protobuf_key:"bytes,1,opt,name=key" protobuf_val:"bytes,2,opt,name=value"`
Info map[string]*_struct.ListValue `protobuf:"bytes,7,rep,name=info,proto3" json:"info,omitempty" protobuf_key:"bytes,1,opt,name=key,proto3" protobuf_val:"bytes,2,opt,name=value,proto3"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *ReadGroupSet) Reset() { *m = ReadGroupSet{} }
func (m *ReadGroupSet) String() string { return proto.CompactTextString(m) }
func (*ReadGroupSet) ProtoMessage() {}
func (*ReadGroupSet) Descriptor() ([]byte, []int) { return fileDescriptor8, []int{0} }
func (m *ReadGroupSet) Reset() { *m = ReadGroupSet{} }
func (m *ReadGroupSet) String() string { return proto.CompactTextString(m) }
func (*ReadGroupSet) ProtoMessage() {}
func (*ReadGroupSet) Descriptor() ([]byte, []int) {
return fileDescriptor_readgroupset_a1ee2d6c49daf62b, []int{0}
}
func (m *ReadGroupSet) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_ReadGroupSet.Unmarshal(m, b)
}
func (m *ReadGroupSet) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_ReadGroupSet.Marshal(b, m, deterministic)
}
func (dst *ReadGroupSet) XXX_Merge(src proto.Message) {
xxx_messageInfo_ReadGroupSet.Merge(dst, src)
}
func (m *ReadGroupSet) XXX_Size() int {
return xxx_messageInfo_ReadGroupSet.Size(m)
}
func (m *ReadGroupSet) XXX_DiscardUnknown() {
xxx_messageInfo_ReadGroupSet.DiscardUnknown(m)
}
var xxx_messageInfo_ReadGroupSet proto.InternalMessageInfo
func (m *ReadGroupSet) GetId() string {
if m != nil {
@ -91,7 +119,7 @@ func (m *ReadGroupSet) GetReadGroups() []*ReadGroup {
return nil
}
func (m *ReadGroupSet) GetInfo() map[string]*google_protobuf3.ListValue {
func (m *ReadGroupSet) GetInfo() map[string]*_struct.ListValue {
if m != nil {
return m.Info
}
@ -100,11 +128,14 @@ func (m *ReadGroupSet) GetInfo() map[string]*google_protobuf3.ListValue {
func init() {
proto.RegisterType((*ReadGroupSet)(nil), "google.genomics.v1.ReadGroupSet")
proto.RegisterMapType((map[string]*_struct.ListValue)(nil), "google.genomics.v1.ReadGroupSet.InfoEntry")
}
func init() { proto.RegisterFile("google/genomics/v1/readgroupset.proto", fileDescriptor8) }
func init() {
proto.RegisterFile("google/genomics/v1/readgroupset.proto", fileDescriptor_readgroupset_a1ee2d6c49daf62b)
}
var fileDescriptor8 = []byte{
var fileDescriptor_readgroupset_a1ee2d6c49daf62b = []byte{
// 367 bytes of a gzipped FileDescriptorProto
0x1f, 0x8b, 0x08, 0x00, 0x00, 0x00, 0x00, 0x00, 0x02, 0xff, 0x7c, 0x91, 0x4f, 0x8b, 0xdb, 0x30,
0x10, 0xc5, 0xb1, 0xf3, 0xa7, 0xcd, 0xa4, 0x84, 0x54, 0x87, 0x62, 0x4c, 0x03, 0x21, 0x50, 0x08,

630
vendor/google.golang.org/genproto/googleapis/genomics/v1/reads.pb.go generated vendored
View File

File diff suppressed because it is too large Load Diff

410
vendor/google.golang.org/genproto/googleapis/genomics/v1/references.pb.go generated vendored
View File

@ -1,7 +1,7 @@
// Code generated by protoc-gen-go. DO NOT EDIT.
// source: google/genomics/v1/references.proto
package genomics
package genomics // import "google.golang.org/genproto/googleapis/genomics/v1"
import proto "github.com/golang/protobuf/proto"
import fmt "fmt"
@ -18,6 +18,12 @@ var _ = proto.Marshal
var _ = fmt.Errorf
var _ = math.Inf
// This is a compile-time assertion to ensure that this generated file
// is compatible with the proto package it is being compiled against.
// A compilation error at this line likely means your copy of the
// proto package needs to be updated.
const _ = proto.ProtoPackageIsVersion2 // please upgrade the proto package
// A reference is a canonical assembled DNA sequence, intended to act as a
// reference coordinate space for other genomic annotations. A single reference
// might represent the human chromosome 1 or mitochandrial DNA, for instance. A
@ -27,29 +33,51 @@ var _ = math.Inf
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
type Reference struct {
// The server-generated reference ID, unique across all references.
Id string `protobuf:"bytes,1,opt,name=id" json:"id,omitempty"`
Id string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
// The length of this reference's sequence.
Length int64 `protobuf:"varint,2,opt,name=length" json:"length,omitempty"`
Length int64 `protobuf:"varint,2,opt,name=length,proto3" json:"length,omitempty"`
// MD5 of the upper-case sequence excluding all whitespace characters (this
// is equivalent to SQ:M5 in SAM). This value is represented in lower case
// hexadecimal format.
Md5Checksum string `protobuf:"bytes,3,opt,name=md5checksum" json:"md5checksum,omitempty"`
Md5Checksum string `protobuf:"bytes,3,opt,name=md5checksum,proto3" json:"md5checksum,omitempty"`
// The name of this reference, for example `22`.
Name string `protobuf:"bytes,4,opt,name=name" json:"name,omitempty"`
Name string `protobuf:"bytes,4,opt,name=name,proto3" json:"name,omitempty"`
// The URI from which the sequence was obtained. Typically specifies a FASTA
// format file.
SourceUri string `protobuf:"bytes,5,opt,name=source_uri,json=sourceUri" json:"source_uri,omitempty"`
SourceUri string `protobuf:"bytes,5,opt,name=source_uri,json=sourceUri,proto3" json:"source_uri,omitempty"`
// All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally
// with a version number, for example `GCF_000001405.26`.
SourceAccessions []string `protobuf:"bytes,6,rep,name=source_accessions,json=sourceAccessions" json:"source_accessions,omitempty"`
SourceAccessions []string `protobuf:"bytes,6,rep,name=source_accessions,json=sourceAccessions,proto3" json:"source_accessions,omitempty"`
// ID from http://www.ncbi.nlm.nih.gov/taxonomy. For example, 9606 for human.
NcbiTaxonId int32 `protobuf:"varint,7,opt,name=ncbi_taxon_id,json=ncbiTaxonId" json:"ncbi_taxon_id,omitempty"`
NcbiTaxonId int32 `protobuf:"varint,7,opt,name=ncbi_taxon_id,json=ncbiTaxonId,proto3" json:"ncbi_taxon_id,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *Reference) Reset() { *m = Reference{} }
func (m *Reference) String() string { return proto.CompactTextString(m) }
func (*Reference) ProtoMessage() {}
func (*Reference) Descriptor() ([]byte, []int) { return fileDescriptor10, []int{0} }
func (m *Reference) Reset() { *m = Reference{} }
func (m *Reference) String() string { return proto.CompactTextString(m) }
func (*Reference) ProtoMessage() {}
func (*Reference) Descriptor() ([]byte, []int) {
return fileDescriptor_references_4f3354422baff2a6, []int{0}
}
func (m *Reference) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_Reference.Unmarshal(m, b)
}
func (m *Reference) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_Reference.Marshal(b, m, deterministic)
}
func (dst *Reference) XXX_Merge(src proto.Message) {
xxx_messageInfo_Reference.Merge(dst, src)
}
func (m *Reference) XXX_Size() int {
return xxx_messageInfo_Reference.Size(m)
}
func (m *Reference) XXX_DiscardUnknown() {
xxx_messageInfo_Reference.DiscardUnknown(m)
}
var xxx_messageInfo_Reference proto.InternalMessageInfo
func (m *Reference) GetId() string {
if m != nil {
@ -110,37 +138,59 @@ func (m *Reference) GetNcbiTaxonId() int32 {
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
type ReferenceSet struct {
// The server-generated reference set ID, unique across all reference sets.
Id string `protobuf:"bytes,1,opt,name=id" json:"id,omitempty"`
Id string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
// The IDs of the reference objects that are part of this set.
// `Reference.md5checksum` must be unique within this set.
ReferenceIds []string `protobuf:"bytes,2,rep,name=reference_ids,json=referenceIds" json:"reference_ids,omitempty"`
ReferenceIds []string `protobuf:"bytes,2,rep,name=reference_ids,json=referenceIds,proto3" json:"reference_ids,omitempty"`
// Order-independent MD5 checksum which identifies this reference set. The
// checksum is computed by sorting all lower case hexidecimal string
// `reference.md5checksum` (for all reference in this set) in
// ascending lexicographic order, concatenating, and taking the MD5 of that
// value. The resulting value is represented in lower case hexadecimal format.
Md5Checksum string `protobuf:"bytes,3,opt,name=md5checksum" json:"md5checksum,omitempty"`
Md5Checksum string `protobuf:"bytes,3,opt,name=md5checksum,proto3" json:"md5checksum,omitempty"`
// ID from http://www.ncbi.nlm.nih.gov/taxonomy (for example, 9606 for human)
// indicating the species which this reference set is intended to model. Note
// that contained references may specify a different `ncbiTaxonId`, as
// assemblies may contain reference sequences which do not belong to the
// modeled species, for example EBV in a human reference genome.
NcbiTaxonId int32 `protobuf:"varint,4,opt,name=ncbi_taxon_id,json=ncbiTaxonId" json:"ncbi_taxon_id,omitempty"`
NcbiTaxonId int32 `protobuf:"varint,4,opt,name=ncbi_taxon_id,json=ncbiTaxonId,proto3" json:"ncbi_taxon_id,omitempty"`
// Free text description of this reference set.
Description string `protobuf:"bytes,5,opt,name=description" json:"description,omitempty"`
Description string `protobuf:"bytes,5,opt,name=description,proto3" json:"description,omitempty"`
// Public id of this reference set, such as `GRCh37`.
AssemblyId string `protobuf:"bytes,6,opt,name=assembly_id,json=assemblyId" json:"assembly_id,omitempty"`
AssemblyId string `protobuf:"bytes,6,opt,name=assembly_id,json=assemblyId,proto3" json:"assembly_id,omitempty"`
// The URI from which the references were obtained.
SourceUri string `protobuf:"bytes,7,opt,name=source_uri,json=sourceUri" json:"source_uri,omitempty"`
SourceUri string `protobuf:"bytes,7,opt,name=source_uri,json=sourceUri,proto3" json:"source_uri,omitempty"`
// All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally
// with a version number, for example `NC_000001.11`.
SourceAccessions []string `protobuf:"bytes,8,rep,name=source_accessions,json=sourceAccessions" json:"source_accessions,omitempty"`
SourceAccessions []string `protobuf:"bytes,8,rep,name=source_accessions,json=sourceAccessions,proto3" json:"source_accessions,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *ReferenceSet) Reset() { *m = ReferenceSet{} }
func (m *ReferenceSet) String() string { return proto.CompactTextString(m) }
func (*ReferenceSet) ProtoMessage() {}
func (*ReferenceSet) Descriptor() ([]byte, []int) { return fileDescriptor10, []int{1} }
func (m *ReferenceSet) Reset() { *m = ReferenceSet{} }
func (m *ReferenceSet) String() string { return proto.CompactTextString(m) }
func (*ReferenceSet) ProtoMessage() {}
func (*ReferenceSet) Descriptor() ([]byte, []int) {
return fileDescriptor_references_4f3354422baff2a6, []int{1}
}
func (m *ReferenceSet) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_ReferenceSet.Unmarshal(m, b)
}
func (m *ReferenceSet) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_ReferenceSet.Marshal(b, m, deterministic)
}
func (dst *ReferenceSet) XXX_Merge(src proto.Message) {
xxx_messageInfo_ReferenceSet.Merge(dst, src)
}
func (m *ReferenceSet) XXX_Size() int {
return xxx_messageInfo_ReferenceSet.Size(m)
}
func (m *ReferenceSet) XXX_DiscardUnknown() {
xxx_messageInfo_ReferenceSet.DiscardUnknown(m)
}
var xxx_messageInfo_ReferenceSet proto.InternalMessageInfo
func (m *ReferenceSet) GetId() string {
if m != nil {
@ -201,28 +251,50 @@ func (m *ReferenceSet) GetSourceAccessions() []string {
type SearchReferenceSetsRequest struct {
// If present, return reference sets for which the
// [md5checksum][google.genomics.v1.ReferenceSet.md5checksum] matches exactly.
Md5Checksums []string `protobuf:"bytes,1,rep,name=md5checksums" json:"md5checksums,omitempty"`
Md5Checksums []string `protobuf:"bytes,1,rep,name=md5checksums,proto3" json:"md5checksums,omitempty"`
// If present, return reference sets for which a prefix of any of
// [sourceAccessions][google.genomics.v1.ReferenceSet.source_accessions]
// match any of these strings. Accession numbers typically have a main number
// and a version, for example `NC_000001.11`.
Accessions []string `protobuf:"bytes,2,rep,name=accessions" json:"accessions,omitempty"`
Accessions []string `protobuf:"bytes,2,rep,name=accessions,proto3" json:"accessions,omitempty"`
// If present, return reference sets for which a substring of their
// `assemblyId` matches this string (case insensitive).
AssemblyId string `protobuf:"bytes,3,opt,name=assembly_id,json=assemblyId" json:"assembly_id,omitempty"`
AssemblyId string `protobuf:"bytes,3,opt,name=assembly_id,json=assemblyId,proto3" json:"assembly_id,omitempty"`
// The continuation token, which is used to page through large result sets.
// To get the next page of results, set this parameter to the value of
// `nextPageToken` from the previous response.
PageToken string `protobuf:"bytes,4,opt,name=page_token,json=pageToken" json:"page_token,omitempty"`
PageToken string `protobuf:"bytes,4,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
// The maximum number of results to return in a single page. If unspecified,
// defaults to 1024. The maximum value is 4096.
PageSize int32 `protobuf:"varint,5,opt,name=page_size,json=pageSize" json:"page_size,omitempty"`
PageSize int32 `protobuf:"varint,5,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *SearchReferenceSetsRequest) Reset() { *m = SearchReferenceSetsRequest{} }
func (m *SearchReferenceSetsRequest) String() string { return proto.CompactTextString(m) }
func (*SearchReferenceSetsRequest) ProtoMessage() {}
func (*SearchReferenceSetsRequest) Descriptor() ([]byte, []int) { return fileDescriptor10, []int{2} }
func (m *SearchReferenceSetsRequest) Reset() { *m = SearchReferenceSetsRequest{} }
func (m *SearchReferenceSetsRequest) String() string { return proto.CompactTextString(m) }
func (*SearchReferenceSetsRequest) ProtoMessage() {}
func (*SearchReferenceSetsRequest) Descriptor() ([]byte, []int) {
return fileDescriptor_references_4f3354422baff2a6, []int{2}
}
func (m *SearchReferenceSetsRequest) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_SearchReferenceSetsRequest.Unmarshal(m, b)
}
func (m *SearchReferenceSetsRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_SearchReferenceSetsRequest.Marshal(b, m, deterministic)
}
func (dst *SearchReferenceSetsRequest) XXX_Merge(src proto.Message) {
xxx_messageInfo_SearchReferenceSetsRequest.Merge(dst, src)
}
func (m *SearchReferenceSetsRequest) XXX_Size() int {
return xxx_messageInfo_SearchReferenceSetsRequest.Size(m)
}
func (m *SearchReferenceSetsRequest) XXX_DiscardUnknown() {
xxx_messageInfo_SearchReferenceSetsRequest.DiscardUnknown(m)
}
var xxx_messageInfo_SearchReferenceSetsRequest proto.InternalMessageInfo
func (m *SearchReferenceSetsRequest) GetMd5Checksums() []string {
if m != nil {
@ -261,17 +333,39 @@ func (m *SearchReferenceSetsRequest) GetPageSize() int32 {
type SearchReferenceSetsResponse struct {
// The matching references sets.
ReferenceSets []*ReferenceSet `protobuf:"bytes,1,rep,name=reference_sets,json=referenceSets" json:"reference_sets,omitempty"`
ReferenceSets []*ReferenceSet `protobuf:"bytes,1,rep,name=reference_sets,json=referenceSets,proto3" json:"reference_sets,omitempty"`
// The continuation token, which is used to page through large result sets.
// Provide this value in a subsequent request to return the next page of
// results. This field will be empty if there aren't any additional results.
NextPageToken string `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken" json:"next_page_token,omitempty"`
NextPageToken string `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *SearchReferenceSetsResponse) Reset() { *m = SearchReferenceSetsResponse{} }
func (m *SearchReferenceSetsResponse) String() string { return proto.CompactTextString(m) }
func (*SearchReferenceSetsResponse) ProtoMessage() {}
func (*SearchReferenceSetsResponse) Descriptor() ([]byte, []int) { return fileDescriptor10, []int{3} }
func (m *SearchReferenceSetsResponse) Reset() { *m = SearchReferenceSetsResponse{} }
func (m *SearchReferenceSetsResponse) String() string { return proto.CompactTextString(m) }
func (*SearchReferenceSetsResponse) ProtoMessage() {}
func (*SearchReferenceSetsResponse) Descriptor() ([]byte, []int) {
return fileDescriptor_references_4f3354422baff2a6, []int{3}
}
func (m *SearchReferenceSetsResponse) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_SearchReferenceSetsResponse.Unmarshal(m, b)
}
func (m *SearchReferenceSetsResponse) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_SearchReferenceSetsResponse.Marshal(b, m, deterministic)
}
func (dst *SearchReferenceSetsResponse) XXX_Merge(src proto.Message) {
xxx_messageInfo_SearchReferenceSetsResponse.Merge(dst, src)
}
func (m *SearchReferenceSetsResponse) XXX_Size() int {
return xxx_messageInfo_SearchReferenceSetsResponse.Size(m)
}
func (m *SearchReferenceSetsResponse) XXX_DiscardUnknown() {
xxx_messageInfo_SearchReferenceSetsResponse.DiscardUnknown(m)
}
var xxx_messageInfo_SearchReferenceSetsResponse proto.InternalMessageInfo
func (m *SearchReferenceSetsResponse) GetReferenceSets() []*ReferenceSet {
if m != nil {
@ -289,13 +383,35 @@ func (m *SearchReferenceSetsResponse) GetNextPageToken() string {
type GetReferenceSetRequest struct {
// The ID of the reference set.
ReferenceSetId string `protobuf:"bytes,1,opt,name=reference_set_id,json=referenceSetId" json:"reference_set_id,omitempty"`
ReferenceSetId string `protobuf:"bytes,1,opt,name=reference_set_id,json=referenceSetId,proto3" json:"reference_set_id,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *GetReferenceSetRequest) Reset() { *m = GetReferenceSetRequest{} }
func (m *GetReferenceSetRequest) String() string { return proto.CompactTextString(m) }
func (*GetReferenceSetRequest) ProtoMessage() {}
func (*GetReferenceSetRequest) Descriptor() ([]byte, []int) { return fileDescriptor10, []int{4} }
func (m *GetReferenceSetRequest) Reset() { *m = GetReferenceSetRequest{} }
func (m *GetReferenceSetRequest) String() string { return proto.CompactTextString(m) }
func (*GetReferenceSetRequest) ProtoMessage() {}
func (*GetReferenceSetRequest) Descriptor() ([]byte, []int) {
return fileDescriptor_references_4f3354422baff2a6, []int{4}
}
func (m *GetReferenceSetRequest) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_GetReferenceSetRequest.Unmarshal(m, b)
}
func (m *GetReferenceSetRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_GetReferenceSetRequest.Marshal(b, m, deterministic)
}
func (dst *GetReferenceSetRequest) XXX_Merge(src proto.Message) {
xxx_messageInfo_GetReferenceSetRequest.Merge(dst, src)
}
func (m *GetReferenceSetRequest) XXX_Size() int {
return xxx_messageInfo_GetReferenceSetRequest.Size(m)
}
func (m *GetReferenceSetRequest) XXX_DiscardUnknown() {
xxx_messageInfo_GetReferenceSetRequest.DiscardUnknown(m)
}
var xxx_messageInfo_GetReferenceSetRequest proto.InternalMessageInfo
func (m *GetReferenceSetRequest) GetReferenceSetId() string {
if m != nil {
@ -307,27 +423,49 @@ func (m *GetReferenceSetRequest) GetReferenceSetId() string {
type SearchReferencesRequest struct {
// If present, return references for which the
// [md5checksum][google.genomics.v1.Reference.md5checksum] matches exactly.
Md5Checksums []string `protobuf:"bytes,1,rep,name=md5checksums" json:"md5checksums,omitempty"`
Md5Checksums []string `protobuf:"bytes,1,rep,name=md5checksums,proto3" json:"md5checksums,omitempty"`
// If present, return references for which a prefix of any of
// [sourceAccessions][google.genomics.v1.Reference.source_accessions] match
// any of these strings. Accession numbers typically have a main number and a
// version, for example `GCF_000001405.26`.
Accessions []string `protobuf:"bytes,2,rep,name=accessions" json:"accessions,omitempty"`
Accessions []string `protobuf:"bytes,2,rep,name=accessions,proto3" json:"accessions,omitempty"`
// If present, return only references which belong to this reference set.
ReferenceSetId string `protobuf:"bytes,3,opt,name=reference_set_id,json=referenceSetId" json:"reference_set_id,omitempty"`
ReferenceSetId string `protobuf:"bytes,3,opt,name=reference_set_id,json=referenceSetId,proto3" json:"reference_set_id,omitempty"`
// The continuation token, which is used to page through large result sets.
// To get the next page of results, set this parameter to the value of
// `nextPageToken` from the previous response.
PageToken string `protobuf:"bytes,4,opt,name=page_token,json=pageToken" json:"page_token,omitempty"`
PageToken string `protobuf:"bytes,4,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
// The maximum number of results to return in a single page. If unspecified,
// defaults to 1024. The maximum value is 4096.
PageSize int32 `protobuf:"varint,5,opt,name=page_size,json=pageSize" json:"page_size,omitempty"`
PageSize int32 `protobuf:"varint,5,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *SearchReferencesRequest) Reset() { *m = SearchReferencesRequest{} }
func (m *SearchReferencesRequest) String() string { return proto.CompactTextString(m) }
func (*SearchReferencesRequest) ProtoMessage() {}
func (*SearchReferencesRequest) Descriptor() ([]byte, []int) { return fileDescriptor10, []int{5} }
func (m *SearchReferencesRequest) Reset() { *m = SearchReferencesRequest{} }
func (m *SearchReferencesRequest) String() string { return proto.CompactTextString(m) }
func (*SearchReferencesRequest) ProtoMessage() {}
func (*SearchReferencesRequest) Descriptor() ([]byte, []int) {
return fileDescriptor_references_4f3354422baff2a6, []int{5}
}
func (m *SearchReferencesRequest) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_SearchReferencesRequest.Unmarshal(m, b)
}
func (m *SearchReferencesRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_SearchReferencesRequest.Marshal(b, m, deterministic)
}
func (dst *SearchReferencesRequest) XXX_Merge(src proto.Message) {
xxx_messageInfo_SearchReferencesRequest.Merge(dst, src)
}
func (m *SearchReferencesRequest) XXX_Size() int {
return xxx_messageInfo_SearchReferencesRequest.Size(m)
}
func (m *SearchReferencesRequest) XXX_DiscardUnknown() {
xxx_messageInfo_SearchReferencesRequest.DiscardUnknown(m)
}
var xxx_messageInfo_SearchReferencesRequest proto.InternalMessageInfo
func (m *SearchReferencesRequest) GetMd5Checksums() []string {
if m != nil {
@ -366,17 +504,39 @@ func (m *SearchReferencesRequest) GetPageSize() int32 {
type SearchReferencesResponse struct {
// The matching references.
References []*Reference `protobuf:"bytes,1,rep,name=references" json:"references,omitempty"`
References []*Reference `protobuf:"bytes,1,rep,name=references,proto3" json:"references,omitempty"`
// The continuation token, which is used to page through large result sets.
// Provide this value in a subsequent request to return the next page of
// results. This field will be empty if there aren't any additional results.
NextPageToken string `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken" json:"next_page_token,omitempty"`
NextPageToken string `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *SearchReferencesResponse) Reset() { *m = SearchReferencesResponse{} }
func (m *SearchReferencesResponse) String() string { return proto.CompactTextString(m) }
func (*SearchReferencesResponse) ProtoMessage() {}
func (*SearchReferencesResponse) Descriptor() ([]byte, []int) { return fileDescriptor10, []int{6} }
func (m *SearchReferencesResponse) Reset() { *m = SearchReferencesResponse{} }
func (m *SearchReferencesResponse) String() string { return proto.CompactTextString(m) }
func (*SearchReferencesResponse) ProtoMessage() {}
func (*SearchReferencesResponse) Descriptor() ([]byte, []int) {
return fileDescriptor_references_4f3354422baff2a6, []int{6}
}
func (m *SearchReferencesResponse) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_SearchReferencesResponse.Unmarshal(m, b)
}
func (m *SearchReferencesResponse) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_SearchReferencesResponse.Marshal(b, m, deterministic)
}
func (dst *SearchReferencesResponse) XXX_Merge(src proto.Message) {
xxx_messageInfo_SearchReferencesResponse.Merge(dst, src)
}
func (m *SearchReferencesResponse) XXX_Size() int {
return xxx_messageInfo_SearchReferencesResponse.Size(m)
}
func (m *SearchReferencesResponse) XXX_DiscardUnknown() {
xxx_messageInfo_SearchReferencesResponse.DiscardUnknown(m)
}
var xxx_messageInfo_SearchReferencesResponse proto.InternalMessageInfo
func (m *SearchReferencesResponse) GetReferences() []*Reference {
if m != nil {
@ -394,13 +554,35 @@ func (m *SearchReferencesResponse) GetNextPageToken() string {
type GetReferenceRequest struct {
// The ID of the reference.
ReferenceId string `protobuf:"bytes,1,opt,name=reference_id,json=referenceId" json:"reference_id,omitempty"`
ReferenceId string `protobuf:"bytes,1,opt,name=reference_id,json=referenceId,proto3" json:"reference_id,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *GetReferenceRequest) Reset() { *m = GetReferenceRequest{} }
func (m *GetReferenceRequest) String() string { return proto.CompactTextString(m) }
func (*GetReferenceRequest) ProtoMessage() {}
func (*GetReferenceRequest) Descriptor() ([]byte, []int) { return fileDescriptor10, []int{7} }
func (m *GetReferenceRequest) Reset() { *m = GetReferenceRequest{} }
func (m *GetReferenceRequest) String() string { return proto.CompactTextString(m) }
func (*GetReferenceRequest) ProtoMessage() {}
func (*GetReferenceRequest) Descriptor() ([]byte, []int) {
return fileDescriptor_references_4f3354422baff2a6, []int{7}
}
func (m *GetReferenceRequest) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_GetReferenceRequest.Unmarshal(m, b)
}
func (m *GetReferenceRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_GetReferenceRequest.Marshal(b, m, deterministic)
}
func (dst *GetReferenceRequest) XXX_Merge(src proto.Message) {
xxx_messageInfo_GetReferenceRequest.Merge(dst, src)
}
func (m *GetReferenceRequest) XXX_Size() int {
return xxx_messageInfo_GetReferenceRequest.Size(m)
}
func (m *GetReferenceRequest) XXX_DiscardUnknown() {
xxx_messageInfo_GetReferenceRequest.DiscardUnknown(m)
}
var xxx_messageInfo_GetReferenceRequest proto.InternalMessageInfo
func (m *GetReferenceRequest) GetReferenceId() string {
if m != nil {
@ -411,26 +593,48 @@ func (m *GetReferenceRequest) GetReferenceId() string {
type ListBasesRequest struct {
// The ID of the reference.
ReferenceId string `protobuf:"bytes,1,opt,name=reference_id,json=referenceId" json:"reference_id,omitempty"`
ReferenceId string `protobuf:"bytes,1,opt,name=reference_id,json=referenceId,proto3" json:"reference_id,omitempty"`
// The start position (0-based) of this query. Defaults to 0.
Start int64 `protobuf:"varint,2,opt,name=start" json:"start,omitempty"`
Start int64 `protobuf:"varint,2,opt,name=start,proto3" json:"start,omitempty"`
// The end position (0-based, exclusive) of this query. Defaults to the length
// of this reference.
End int64 `protobuf:"varint,3,opt,name=end" json:"end,omitempty"`
End int64 `protobuf:"varint,3,opt,name=end,proto3" json:"end,omitempty"`
// The continuation token, which is used to page through large result sets.
// To get the next page of results, set this parameter to the value of
// `nextPageToken` from the previous response.
PageToken string `protobuf:"bytes,4,opt,name=page_token,json=pageToken" json:"page_token,omitempty"`
PageToken string `protobuf:"bytes,4,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
// The maximum number of bases to return in a single page. If unspecified,
// defaults to 200Kbp (kilo base pairs). The maximum value is 10Mbp (mega base
// pairs).
PageSize int32 `protobuf:"varint,5,opt,name=page_size,json=pageSize" json:"page_size,omitempty"`
PageSize int32 `protobuf:"varint,5,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *ListBasesRequest) Reset() { *m = ListBasesRequest{} }
func (m *ListBasesRequest) String() string { return proto.CompactTextString(m) }
func (*ListBasesRequest) ProtoMessage() {}
func (*ListBasesRequest) Descriptor() ([]byte, []int) { return fileDescriptor10, []int{8} }
func (m *ListBasesRequest) Reset() { *m = ListBasesRequest{} }
func (m *ListBasesRequest) String() string { return proto.CompactTextString(m) }
func (*ListBasesRequest) ProtoMessage() {}
func (*ListBasesRequest) Descriptor() ([]byte, []int) {
return fileDescriptor_references_4f3354422baff2a6, []int{8}
}
func (m *ListBasesRequest) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_ListBasesRequest.Unmarshal(m, b)
}
func (m *ListBasesRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_ListBasesRequest.Marshal(b, m, deterministic)
}
func (dst *ListBasesRequest) XXX_Merge(src proto.Message) {
xxx_messageInfo_ListBasesRequest.Merge(dst, src)
}
func (m *ListBasesRequest) XXX_Size() int {
return xxx_messageInfo_ListBasesRequest.Size(m)
}
func (m *ListBasesRequest) XXX_DiscardUnknown() {
xxx_messageInfo_ListBasesRequest.DiscardUnknown(m)
}
var xxx_messageInfo_ListBasesRequest proto.InternalMessageInfo
func (m *ListBasesRequest) GetReferenceId() string {
if m != nil {
@ -471,19 +675,41 @@ type ListBasesResponse struct {
// The offset position (0-based) of the given `sequence` from the
// start of this `Reference`. This value will differ for each page
// in a paginated request.
Offset int64 `protobuf:"varint,1,opt,name=offset" json:"offset,omitempty"`
Offset int64 `protobuf:"varint,1,opt,name=offset,proto3" json:"offset,omitempty"`
// A substring of the bases that make up this reference.
Sequence string `protobuf:"bytes,2,opt,name=sequence" json:"sequence,omitempty"`
Sequence string `protobuf:"bytes,2,opt,name=sequence,proto3" json:"sequence,omitempty"`
// The continuation token, which is used to page through large result sets.
// Provide this value in a subsequent request to return the next page of
// results. This field will be empty if there aren't any additional results.
NextPageToken string `protobuf:"bytes,3,opt,name=next_page_token,json=nextPageToken" json:"next_page_token,omitempty"`
NextPageToken string `protobuf:"bytes,3,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *ListBasesResponse) Reset() { *m = ListBasesResponse{} }
func (m *ListBasesResponse) String() string { return proto.CompactTextString(m) }
func (*ListBasesResponse) ProtoMessage() {}
func (*ListBasesResponse) Descriptor() ([]byte, []int) { return fileDescriptor10, []int{9} }
func (m *ListBasesResponse) Reset() { *m = ListBasesResponse{} }
func (m *ListBasesResponse) String() string { return proto.CompactTextString(m) }
func (*ListBasesResponse) ProtoMessage() {}
func (*ListBasesResponse) Descriptor() ([]byte, []int) {
return fileDescriptor_references_4f3354422baff2a6, []int{9}
}
func (m *ListBasesResponse) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_ListBasesResponse.Unmarshal(m, b)
}
func (m *ListBasesResponse) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_ListBasesResponse.Marshal(b, m, deterministic)
}
func (dst *ListBasesResponse) XXX_Merge(src proto.Message) {
xxx_messageInfo_ListBasesResponse.Merge(dst, src)
}
func (m *ListBasesResponse) XXX_Size() int {
return xxx_messageInfo_ListBasesResponse.Size(m)
}
func (m *ListBasesResponse) XXX_DiscardUnknown() {
xxx_messageInfo_ListBasesResponse.DiscardUnknown(m)
}
var xxx_messageInfo_ListBasesResponse proto.InternalMessageInfo
func (m *ListBasesResponse) GetOffset() int64 {
if m != nil {
@ -527,8 +753,9 @@ var _ grpc.ClientConn
// is compatible with the grpc package it is being compiled against.
const _ = grpc.SupportPackageIsVersion4
// Client API for ReferenceServiceV1 service
// ReferenceServiceV1Client is the client API for ReferenceServiceV1 service.
//
// For semantics around ctx use and closing/ending streaming RPCs, please refer to https://godoc.org/google.golang.org/grpc#ClientConn.NewStream.
type ReferenceServiceV1Client interface {
// Searches for reference sets which match the given criteria.
//
@ -587,7 +814,7 @@ func NewReferenceServiceV1Client(cc *grpc.ClientConn) ReferenceServiceV1Client {
func (c *referenceServiceV1Client) SearchReferenceSets(ctx context.Context, in *SearchReferenceSetsRequest, opts ...grpc.CallOption) (*SearchReferenceSetsResponse, error) {
out := new(SearchReferenceSetsResponse)
err := grpc.Invoke(ctx, "/google.genomics.v1.ReferenceServiceV1/SearchReferenceSets", in, out, c.cc, opts...)
err := c.cc.Invoke(ctx, "/google.genomics.v1.ReferenceServiceV1/SearchReferenceSets", in, out, opts...)
if err != nil {
return nil, err
}
@ -596,7 +823,7 @@ func (c *referenceServiceV1Client) SearchReferenceSets(ctx context.Context, in *
func (c *referenceServiceV1Client) GetReferenceSet(ctx context.Context, in *GetReferenceSetRequest, opts ...grpc.CallOption) (*ReferenceSet, error) {
out := new(ReferenceSet)
err := grpc.Invoke(ctx, "/google.genomics.v1.ReferenceServiceV1/GetReferenceSet", in, out, c.cc, opts...)
err := c.cc.Invoke(ctx, "/google.genomics.v1.ReferenceServiceV1/GetReferenceSet", in, out, opts...)
if err != nil {
return nil, err
}
@ -605,7 +832,7 @@ func (c *referenceServiceV1Client) GetReferenceSet(ctx context.Context, in *GetR
func (c *referenceServiceV1Client) SearchReferences(ctx context.Context, in *SearchReferencesRequest, opts ...grpc.CallOption) (*SearchReferencesResponse, error) {
out := new(SearchReferencesResponse)
err := grpc.Invoke(ctx, "/google.genomics.v1.ReferenceServiceV1/SearchReferences", in, out, c.cc, opts...)
err := c.cc.Invoke(ctx, "/google.genomics.v1.ReferenceServiceV1/SearchReferences", in, out, opts...)
if err != nil {
return nil, err
}
@ -614,7 +841,7 @@ func (c *referenceServiceV1Client) SearchReferences(ctx context.Context, in *Sea
func (c *referenceServiceV1Client) GetReference(ctx context.Context, in *GetReferenceRequest, opts ...grpc.CallOption) (*Reference, error) {
out := new(Reference)
err := grpc.Invoke(ctx, "/google.genomics.v1.ReferenceServiceV1/GetReference", in, out, c.cc, opts...)
err := c.cc.Invoke(ctx, "/google.genomics.v1.ReferenceServiceV1/GetReference", in, out, opts...)
if err != nil {
return nil, err
}
@ -623,15 +850,14 @@ func (c *referenceServiceV1Client) GetReference(ctx context.Context, in *GetRefe
func (c *referenceServiceV1Client) ListBases(ctx context.Context, in *ListBasesRequest, opts ...grpc.CallOption) (*ListBasesResponse, error) {
out := new(ListBasesResponse)
err := grpc.Invoke(ctx, "/google.genomics.v1.ReferenceServiceV1/ListBases", in, out, c.cc, opts...)
err := c.cc.Invoke(ctx, "/google.genomics.v1.ReferenceServiceV1/ListBases", in, out, opts...)
if err != nil {
return nil, err
}
return out, nil
}
// Server API for ReferenceServiceV1 service
// ReferenceServiceV1Server is the server API for ReferenceServiceV1 service.
type ReferenceServiceV1Server interface {
// Searches for reference sets which match the given criteria.
//
@ -803,9 +1029,11 @@ var _ReferenceServiceV1_serviceDesc = grpc.ServiceDesc{
Metadata: "google/genomics/v1/references.proto",
}
func init() { proto.RegisterFile("google/genomics/v1/references.proto", fileDescriptor10) }
func init() {
proto.RegisterFile("google/genomics/v1/references.proto", fileDescriptor_references_4f3354422baff2a6)
}
var fileDescriptor10 = []byte{
var fileDescriptor_references_4f3354422baff2a6 = []byte{
// 851 bytes of a gzipped FileDescriptorProto
0x1f, 0x8b, 0x08, 0x00, 0x00, 0x00, 0x00, 0x00, 0x02, 0xff, 0xac, 0x56, 0x41, 0x6f, 0x1b, 0x45,
0x14, 0xd6, 0x78, 0x63, 0x37, 0x7e, 0x76, 0x12, 0xf7, 0x15, 0xc2, 0xca, 0x25, 0xd4, 0x6c, 0x9a,

1262
vendor/google.golang.org/genproto/googleapis/genomics/v1/variants.pb.go generated vendored
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954
vendor/google.golang.org/genproto/googleapis/genomics/v1alpha2/pipelines.pb.go generated vendored
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